GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 06:25:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS14022A05 KS14 Capsicum annuum cDNA, mRNA sequence.
GD059433.1:436-459
ATCCATGGCCATATTGGTTAAAAACGAACA436GTAAAAAGTTGCTATCCTTCCGTCTTTCCAACTCAAAGAAGCACCACAAGATAA
KS14028F03 KS14 Capsicum annuum cDNA, mRNA sequence.
GD060042.1:436-459
ATCCATGGCCATATTGGTTAAAAACGAACA436GTAAAAAGTTGCTATCCTTCCGTCTTTCCAACTCAAAGAAGCACCACAAGATAA
TSA: Capsicum annuum MGMT_Contig3153, mRNA sequence.
JW053397.1:720-743
ATCCATGGCCATATTGGTTAAAAACGAACA720GTAAAAAGTTGCTATCCTTCCGTCTTTCCAACTCAAAGAAGCGCCACAAGATAA
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:213605179-213605202
ATCCATGGCAATATTGGTTAAAAGCGAACA213605179GTAAAAAGTTGCTATCCTTCCGTCTTTCCAACTCAAAGAAGCGCCACAAGATAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 4.
CP124728.1:39549696-39549719
ATCCATGGCCATATTGGTTAAAAACGAACA39549696GTAAAAAGTTGCTATCCTTCCGTCTTTCCAACTCAAAGAAGCGCCACAAGATAA
KR 1020160038243-A/197: Single nucleotide polymorphism marker set for marker-assisted breeding in Capsicum and uses thereof.
LG144904.1:80-103
TTATCTTGTGGTGCTTCTTTGAGTTGGAAA80GACGGAAGGATAGCAACTTTTTACTGTTCGTTTTTAACCAAT
KS14023H05 KS14 Capsicum annuum cDNA, mRNA sequence.
GD059606.1:435-458
TTATCTTGTGGCGCTTCTTTGAGTTGGAAA435GACGGAAGGATAGCAACTTTTTACTGTTCGCTTTTAACCAATATTGCCATGGAT
KS14036H08 KS14 Capsicum annuum cDNA, mRNA sequence.
GD060810.1:435-458
TTATCTTGTGGCGCTTCTTTGAGTTGGAAA435GACGGAAGGATAGCAACTTTTTACTGTTCGCTTTTAACCAATATTGCCATGGAT
KS14037F07 KS14 Capsicum annuum cDNA, mRNA sequence.
GD060877.1:435-458
TTATCTTGTGGCGCTTCTTTGAGTTGGAAA435GACGGAAGGATAGCAACTTTTTACTGTTCGCTTTTAACCAATATTGCCATGGAT
KS16034F02 KS16 Capsicum annuum cDNA, mRNA sequence.
GD072647.1:94-117
TTATCTTGTGGTGCTTCTTTGAGTTGGAAA94GACGGAAGGATAGCAACTTTTTACTGTTCGTTTTTAACCAATATGGCCATGGAT
KS18050H04 KS18 Capsicum annuum cDNA, mRNA sequence.
GD086146.1:416-439
TTATCTTGTGGCGCTTCTTTGAGTTGGAAA416GACGGAAGGATAGCAACTTTTTACTGTTCGCTTTTAACCAATATTGCCATGGAT
KS22022H11 KS22 Capsicum annuum cDNA, mRNA sequence.
GD107104.1:124-147
TTATCTTGTGGCGCTTCTTTGAGTTGGAAA124GACGGAAGGATAGCAACTTTTTACTGTTCGTTTTTAACCAATATGGCCATGGAT
TSA: Capsicum annuum MGMT_Contig13149, mRNA sequence.
JW063393.1:382-405
TTATCTTGTGGCGCTTCTTTGAGTTGGAAA382GACGGAAGGATAGCAACTTTTTACTGTTCGCTTTTAACCAATATTGCCATGGAT
TSA: Capsicum annuum MA_MegaContig_19767, mRNA sequence.
JW158703.1:927-950
TTATCTTGTGGCGCTTCTTTGAGTTGGAAA927GACGGAAGGATAGCAACTTTTTACTGTTCGCTTTTAACCAATATTGCCATGGAT
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:213544946-213544969
TTATCTTGTGGCGCTTCTTTGAGTTGGAAA213544946GACGGAAGGATAGCAACTTTTTACTGTTCGTTTTTAACCAATATGGCCATGGAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 4.
CP124728.1:39489576-39489599
TTATCTTGTGGCGCTTCTTTGAGTTGGAAA39489576GACGGAAGGATAGCAACTTTTTACTGTTCGCTTTTAACCAATATTGCCATGGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gtaaaaagttgctatccttccgtc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gtaaaaagttgctatccttccgtc | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.273 | 0.265 | search_plus_done; http://172.18.8.135:50400/match?q=GTAAAAAGTTGCTATCCTTCCGTC&k=0&no_gap=0&offset=0&limit=50
0.871 | 0.598 | search_minus_done; http://172.18.8.135:50400/match?q=GACGGAAGGATAGCAACTTTTTAC&k=0&no_gap=0&offset=0&limit=45
0.878 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).