GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 21:10:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil cDNA clone:jmsf8k18, 3' end.
CJ769294.1:429-452
CGGATTGCTCGAGCTCGAATATGAATGGCT429GTATGGATCATCCCTCGACAGCTTCCATTTCTCGTCCATGTAATACTCCATTGA
Ipomoea nil cDNA clone:jmsf8k18, 5' end.
CJ752924.1:114-137
TCANTGGAGTATTACNTGGACGAGAAATGG114AAGCTGTCGAGGGATGATCCATACAGCCATTCATATTCGAGCTCGAGCAATCCG
Ipomoea nil mRNA, clone: JMFN018C10, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY930905.1:48-71
TCAATGGAGTATTACATGGACGAGAAATGG48AAGCTGTCGAGGGATGATCCATACAGCCATTCATATTCGAGCTCGAGCAATCCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gtatggatcatccctcgacagctt
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gtatggatcatccctcgacagctt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.136 | 0.127 | search_plus_done; http://172.18.8.135:50400/match?q=GTATGGATCATCCCTCGACAGCTT&k=0&no_gap=0&offset=0&limit=50
0.275 | 0.140 | search_minus_done; http://172.18.8.135:50400/match?q=AAGCTGTCGAGGGATGATCCATAC&k=0&no_gap=0&offset=0&limit=49
0.277 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).