GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 21:25:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig15860, mRNA sequence.
JW066104.1:1027-1049
AGCTCTTTTACTTTTTTCATTATTTCTATC1027GTCTTTAATTTCACTGCGTCCACCATTACGAGGCCTAAAGTGGTGACATCATC
KS12066B07 KS12 Capsicum annuum cDNA, mRNA sequence.
CA526129.1:255-277
GATGATGTCACCACTTTACGCCTCGTAATG255GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT
1871 CM334 Root cDNA Capsicum annuum cDNA clone RR41-70, mRNA sequence.
EB084617.1:279-301
GATGATGTCACCACTTTAGGCCTCGTAAGG279GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT
KS16023A06 KS16 Capsicum annuum cDNA, mRNA sequence.
GD071551.1:153-175
GATGATGTCACCACTTTAGGCCTCGTAATG153GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT
KS16025G04 KS16 Capsicum annuum cDNA, mRNA sequence.
GD071812.1:278-300
GATGATGTCACCACTTTAGGCCTCGTAATG278GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT
KS21006D09 KS21 Capsicum annuum cDNA, mRNA sequence.
GD099729.1:221-243
GATGATGTCACCACTTTAGGCCTCGTAATG221GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT
KS21013E20 KS21 Capsicum annuum cDNA, mRNA sequence.
GD100381.1:242-264
GATGATGTCACCACTTTAGGCCTCGTAATG242GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT
KS21013I22 KS21 Capsicum annuum cDNA, mRNA sequence.
GD100405.1:287-309
GATGATGTCACCACTTTAGGCCTCGTAATG287GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT
KS21027P06 KS21 Capsicum annuum cDNA, mRNA sequence.
GD101721.1:85-107
GATGATGTCACCACTTTAGGCCTCGTAATG85GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAAGTAAAAGAGC
KS21037A20 KS21 Capsicum annuum cDNA, mRNA sequence.
GD102502.1:40-62
GATGATGTCACCACTTTAGGCCTCGTAATG40GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT
KS21049I18 KS21 Capsicum annuum cDNA, mRNA sequence.
GD103598.1:242-264
GATGATGTCACCACTTTAGGCCTCGTAATG242GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT
KS21060E11 KS21 Capsicum annuum cDNA, mRNA sequence.
GD104537.1:287-309
GATGATGTCACCACTTTAGGCCTCGTAATG287GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT
CS01003H01 Hotpepper under oxidative stress Capsicum annuum cDNA 5', mRNA sequence.
GO345450.1:270-292
GATGATGTCACCACTTTAGGCCTCGTAATG270GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT
CS01016C11 Hotpepper under oxidative stress Capsicum annuum cDNA 5', mRNA sequence.
GO345608.1:283-305
GATGATGTCACCACTTTAGGCCTCGTAATG283GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT
Capsicum annuum Takanotsume DNA, chromosome 12, sequence.
AP026707.1:254899149-254899171
GATGATGTCACCACTTTAGGCCTCGTAATG254899149GTGGACGCAGTGAAATTAAAGACGATAGAAATAATGAAAAAAGTAAAAGAGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gtctttaatttcactgcgtccac
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gtctttaatttcactgcgtccac | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.121 | 0.113 | search_plus_done; http://172.18.8.135:50400/match?q=GTCTTTAATTTCACTGCGTCCAC&k=0&no_gap=0&offset=0&limit=50
1.125 | 1.004 | search_minus_done; http://172.18.8.135:50400/match?q=GTGGACGCAGTGAAATTAAAGAC&k=0&no_gap=0&offset=0&limit=49
1.134 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).