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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 14:46:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

EST724967 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAE880 3' end, mRNA sequence.
CK278889.1:79-102
TTACCACCGGGGGCCCTGGTTTAGGCTTGG79GTTTGTAAGTTGGAACTTTAGGGGGGCATGGTTTTTTAACTGGAGGAGGCTTTG
TSA: Capsicum annuum MGMT_Contig22144, mRNA sequence.
JW072388.1:963-986
TTACTACTGGTGGTTCTGGTTTGGGCTTGG963GTTTGTAAGTTGGAACTTTAGGGGGGCATGGCTTTTTAACTGGAGGAGGCTTTG
Solanum tuberosum cultivar RH89-039-16 chromosome 1 clone RH077L17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.
AC217715.1:106294-106317
TTACTACTGGTGGCTCTGGTTTAGGCTTGG106294GTTTGTAAGTTGGAACTTTAGGGGGGCATGGTTTTTTAACTGGAGGAGGCTTTG
Solanum tuberosum cultivar RH89-039-16 chromosome 1 clone RH048M11, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.
AC233393.1:40854-40877
TTACTACTGGTGGCTCTGGTTTAGGCTTGG40854GTTTGTAAGTTGGAACTTTAGGGGGGCATGGTTTTTTAACTGGAGGAGGCTTTG
EST579618 potato roots Solanum tuberosum cDNA clone cPRO23O8 5' end, mRNA sequence.
BM405291.1:257-280
CAAAGCCTCCTCCAGTTAAAAAACCATGCC257CCCCTAAAGTTCCAACTTACAAACCCAAGCCTAAACCAGAGCCACCAGTAGTAA
EST579958 potato roots Solanum tuberosum cDNA clone cPRO24B12 5' end, mRNA sequence.
BM405631.1:181-204
CAAAGCCTCCTCCAGTTAAAAAACCATGCC181CCCCTAAAGTTCCAACTTACAAACCCAAGCCTAAACCAGAGCCACCAGTAGTAA
EST625564 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMJI39 5' end, mRNA sequence.
BQ518149.1:257-280
CAAAGCCTCCTCCAGTTAAAAAACCATGCC257CCCCTAAAGTTCCAACTTACAAACCCAAGCCTAAACCAGAGCCACCAGTAGTAA
EST706938 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAB611 5' end, mRNA sequence.
CK260860.1:684-707
CAAAGCCTCCTCCAGTTAAAAAACCATGCC684CCCCTAAAGTTCCAACTTACAAACCCAAGCCTAAACCAGAGCCACCAGTAGTAA
17827 Swollen Stolon Solanum tuberosum cDNA, mRNA sequence.
CK717892.1:306-329
CAAAGCCTCCTCCAGTTAAAAAACCATGCC306CCCCTAAAGTTCCAACTTACAAACCCAAGCCTAAACCAGAGCCACCAGTAGTAA
74555.1 Swollen Stolon Solanum tuberosum cDNA clone 74555 5', mRNA sequence.
CV302560.1:83-106
CAAAGCCTCCTCCAGTTAAAAAACCATGCC83CCCCTAAAGTTCCAACTTACAAACCCAAGCCTAAACCAGAGCCACCAGTAGTAA
KS19008D01 KS19 Capsicum annuum cDNA, mRNA sequence.
GD088102.1:124-147
CAAAGCCTCCTCCAATTAAAAAGCCATGCC124CCCCTAAAGTTCCAACTTACAAACCCAAGCCCAAACCAGAACCACCAGTAGTAA
KS25036H10 KS25 Capsicum annuum cDNA, mRNA sequence.
GD127061.1:311-334
CAAAGCCTCCTCCAATTAAAAAGCCATGCC311CCCCTAAAGTTCCAACTTACAAACCCAAGCCCAAACCAGAACCACCAGTAGTAA
CS01020H06 Hotpepper under oxidative stress Capsicum annuum cDNA 5', mRNA sequence.
GO344518.1:187-210
CAAAGCCTCCTCCAATTAAAAAGCCATGCC187CCCCTAAAGTTCCAACTTACAAACCCAAGCCCAAACCAGAACCACCAGTAGTAA
TSA: Capsicum annuum MA_MegaContig_29621, mRNA sequence.
JW160209.1:955-978
CAAAGCCTCCTCCAGTTAAAAAGCCATGCC955CCCCTAAAGTTCCAACTTACAAACCCAAGCCCAAACCAGAACCACCAATAGTAA
Solanum tuberosum mRNA for guard cell proline-rich protein.
AJ000997.1:1019-1042
CAAAGCCTCCTCCAGTTAAAAAACCATGCC1019CCCCTAAAGTTCCAACTTACAAACCCAAGCCTAAACCAGAGCCACCAGTAGTAA
Capsicum annuum Takanotsume DNA, chromosome 8, sequence.
AP026703.1:173055516-173055539
CAAAGCCTCCTCCAGTTAAAAAGCCATGCC173055516CCCCTAAAGTTCCAACTTACAAACCCAAGCCCAAACCAGAACCACCAGTAGTAA
Solanum tuberosum cultivar P8 chromosome 1.
CP046688.1:87196181-87196204
CAAAGCCTCCTCCAGTTAAAAAACCATGCC87196181CCCCTAAAGTTCCAACTTACAAACCCAAGCCTAAACCAGAGCCACCAGTAGTAA
Solanum tuberosum cultivar MSH/14-112 chromosome 1.
CP046702.1:87196946-87196969
CAAAGCCTCCTCCAGTTAAAAAACCATGCC87196946CCCCTAAAGTTCCAACTTACAAACCCAAGCCTAAACCAGAGCCACCAGTAGTAA
Solanum pinnatisectum cultivar CGN17745 chromosome 1.
CP047567.1:87168285-87168308
NNNNNNNNCCTCCAGTTAAAAAACCATGCC87168285CCCCTAAAGTTCCAACTTACAAACCCAAGCCTAAACCAGAGCCACCAGTAGTAA
Solanum tuberosum cultivar Solyntus chromosome 1.
CP055234.1:58007513-58007536
CAAAGCCTCCTCCAGTTAAAAAACCATGCC58007513CCCCTAAAGTTCCAACTTACAAACCCAAGCCTAAACCAGAGCCACCAGTAGTAA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 1.
CP124719.1:144657527-144657550
AACCAGAACCTCCAGTTAAAAAGCCATGCC144657527CCCCTAAAGTTCCAACTTACAAACCCAAGCCCAAACCAGAACCACCAGTAGTAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 8.
CP124724.1:184866226-184866249
CAAAGCCTCCTCCAGTTAAAAAGCCATGCC184866226CCCCTAAAGTTCCAACTTACAAACCCAAGCCCAAACCAGAACCACCAGTAGTAA
Solanum verrucosum cultivar 11H23 chromosome 1.
CP133612.1:82894610-82894633
CAAAGCCTCCTCCAGTTAAAAAACCATGCC82894610CCCCTAAAGTTCCAACTTACAAACCCAAGCCTAAACCAGAGCCACCAGTAGTAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/gtttgtaagttggaactttagggg
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : gtttgtaagttggaactttagggg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.384 | 0.376 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTGTAAGTTGGAACTTTAGGGG&k=0&no_gap=0&offset=0&limit=50
0.981 | 0.596 | search_minus_done; http://172.18.8.135:50400/match?q=CCCCTAAAGTTCCAACTTACAAAC&k=0&no_gap=0&offset=0&limit=46
0.993 | 0.012 | cgi_end;

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