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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 04:40:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 17929 from patent US 7557201.
GP486932.1:367-388
GCTTTTGGGAAACACCGTTACGAACCCGTT367TAACAATGGGTATTTTCAGGGCCCGGCGAATGCTCCTTTGGAAGCGGTTTCG
BNLGHi13025 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (AB018441) phi-1 [Nicotiana tabacum], mRNA sequence.
AI729265.1:686-707
GCTTTTGGGAAACACCGTTACCAAACCGTT686TAACAATGGGTATTTTCAGGGCCCGGCGAATGCTCCTTTGGAANCCGTTTCC
G.hir-Cotyledon 515 cDNA from Cotyledons Gossypium hirsutum cDNA, mRNA sequence.
DN779987.1:331-352
GCTTTTGGGAAACACCGTTACGAACCCGTT331TAACAATGGGTATTTTCAGGGCCCGGCGAATGCTCCTTTGGAAGCGGTTTCG
G.hir-Cotyledon 2160 cDNA from Cotyledons Gossypium hirsutum cDNA, mRNA sequence.
DN781632.1:331-352
GCTTTTGGGAAACACCGTTACGAACCCGTT331TAACAATGGGTATTTTCAGGGCCCGGCGAATGCTCCTTTGGAAGCGGTTTCG
EST1055099 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT544459.1:731-752
GCTTTTGGGAAACACCGTTACGAACCCGTT731TAACAATGGGTATTTTCAGGGCCCGGCGAATGCTCCTTTGGAAGCGGTTTCG
EST1072678 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT562038.1:708-729
GCTTTTGGGAAACACCGTTACGAACCCGTT708TAACAATGGGTATTTTCAGGGCCCGGCGAATGCTCCTTTGGAAGCGGTTTCG
UFL_379_60 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES823790.1:548-569
GCTTTTGGGAAACACCGTTACGAACCCGTT548TAACAATGGGTATTTTCAGGGCCCGGCGAATGCTCCTTTGGAAGCGGTTTCG
Capsicum chinense mRNA for putative phosphate-induced protein, complete cds.
AB372271.1:678-699
GGTTTTGGCGGGAACTATAACGAACCCGTT678TAACAATGGGTATTTTCAGGGCCCTGCTACGGCGCCGTTGGAGGCTGTTTCG
Capsicum annuum Takanotsume DNA, chromosome 8, sequence.
AP026703.1:160965955-160965976
GGTTTTGGCGGGAACTATAACGAACCCGTT160965955TAACAATGGGTATTTTCAGGGCCCGGCTACGGCGCCGTTGGAGGCTGTTTCG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 1.
CP124719.1:139160226-139160247
GGTTTTGGCGGGAACTGTAACAAACCCGTT139160226TAACAATGGGTATTTTCAGGGCCCAGCTACGGCTCCGTTGGAGGCTGTTTCG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 8.
CP124724.1:173708859-173708880
GGTTTTGGCGGGAACTATAACGAACCCGTT173708859TAACAATGGGTATTTTCAGGGCCCGGCTACGGCGCCGTTGGAGGCTGTTTCG
KS21019F06 KS21 Capsicum annuum cDNA, mRNA sequence.
GD100925.1:388-409
CGAAACAGCCTCCAACGGCGCCGTAGCCGG388GCCCTGAAAATACCCATTGTTAAACGGGTTCGTTATAGTTCCCGCCAAAACC
KS21029A04 KS21 Capsicum annuum cDNA, mRNA sequence.
GD101822.1:388-409
CGAAACAGCCTCCAACGGCGCCGTAGCCGG388GCCCTGAAAATACCCATTGTTAAACGGGTTCGTTATAGTTCCCGCCAAAACC
KS21059N02 KS21 Capsicum annuum cDNA, mRNA sequence.
GD104489.1:400-421
CGAAACAGCCTCCAACGGCGCCGTAGCCGG400GCCCTGAAAATACCCATTGTTAAACGGGTTCGTTATAGTTCCCGCCAAAACC
KS21062I16 KS21 Capsicum annuum cDNA, mRNA sequence.
GD104742.1:428-449
CGAAACAGCCTCCAACGGCGCCGTAGCCGG428GCCCTGAAAATACCCATTGTTAAACGGGTTCGTTATAGTTCCCGCCAAAACC
KS25001H06 KS25 Capsicum annuum cDNA, mRNA sequence.
GD123932.1:400-421
CGAAACAGCCTCCAACGGCGCCGTAGCCGG400GCCCTGAAAATACCCATTGTTAAACGGGTTCGTTATAGTTCCCGCCAAAACC
KS25022G16 KS25 Capsicum annuum cDNA, mRNA sequence.
GD125819.1:408-429
CGAAACAGCCTCCAACGGCGCCGTAGCCGG408GCCCTGAAAATACCCATTGTTAAACGGGTTCGTTATAGTTCCCGCCAAAACC
KS25040P14 KS25 Capsicum annuum cDNA, mRNA sequence.
GD127446.1:419-440
CGAAACAGCCTCCAACGGCGCCGTAGCCGG419GCCCTGAAAATACCCATTGTTAAACGGGTTCGTTATAGTTCCCGCCAAAACC
KS25053H08 KS25 Capsicum annuum cDNA, mRNA sequence.
GD128626.1:400-421
CGAAACAGCCTCCAACGGCGCCGTAGCCGG400GCCCTGAAAATACCCATTGTTAAACGGGTTCGTTATAGTTCCCGCCAAAACC
KS25055E20 KS25 Capsicum annuum cDNA, mRNA sequence.
GD128811.1:408-429
CGAAACAGCCTCCAACGGCGCCGTAGCCGG408GCCCTGAAAATACCCATTGTTAAACGGGTTCGTTATAGTTCCCGCCAAAACC
TSA: Capsicum annuum MGMT_Contig33747 mRNA sequence.
JW083991.1:724-745
CGAAACAGCCTCCAACGGCGCCGTAGCCGG724GCCCTGAAAATACCCATTGTTAAACGGGTTCGTTATAGTTCCCGCCAAAACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/taacaatgggtattttcagggc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : taacaatgggtattttcagggc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.340 | 0.331 | search_plus_done; http://172.18.8.135:50400/match?q=TAACAATGGGTATTTTCAGGGC&k=0&no_gap=0&offset=0&limit=50
1.096 | 0.756 | search_minus_done; http://172.18.8.135:50400/match?q=GCCCTGAAAATACCCATTGTTA&k=0&no_gap=0&offset=0&limit=39
1.103 | 0.007 | cgi_end;

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