GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:52:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS09013E06 KS09 Capsicum annuum cDNA, mRNA sequence.
CA513924.1:197-220
CCTCTTTTATCCTTTAGTCAGAACAACTGC197TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS11020G02 KS11 Capsicum annuum cDNA, mRNA sequence.
CA521070.1:30-53
CTCTTTTATCCTTTAGTCAGAACAACTGC30TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
JH02011C08 JH-201 Capsicum annuum cDNA 5', mRNA sequence.
CO776340.1:239-262
CCTCTTTTATCCTTTAGTCAGAACAACTGC239TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS13041F10 KS13 Capsicum annuum cDNA, mRNA sequence.
GD055364.1:37-60
CCTCTTTTATCCTTTAGTCAGAACAACTGC37TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS16028G06 KS16 Capsicum annuum cDNA, mRNA sequence.
GD072097.1:133-156
CCTCTTTTATCCTTTAGTCAGAACAACTGC133TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS17013D10 KS17 Capsicum annuum cDNA, mRNA sequence.
GD076698.1:72-95
CCTCTTTTATCCTTTAGTCAGAACAACTGC72TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS21022N09 KS21 Capsicum annuum cDNA, mRNA sequence.
GD101248.1:38-61
GCTCTTTTATCCTTTAGTCAGAACAACTGC38TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS21052C13 KS21 Capsicum annuum cDNA, mRNA sequence.
GD103830.1:38-61
GCTCTTTTATCCTTTAGTCAGAACAACTGC38TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS22005E08 KS22 Capsicum annuum cDNA, mRNA sequence.
GD105487.1:70-93
CCTCTTTTATCCTTTAGTCAGAACAACTGC70TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS22006H08 KS22 Capsicum annuum cDNA, mRNA sequence.
GD105614.1:70-93
CCTCTTTTATCCTTTAGTCAGAACAACTGC70TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS22016D02 KS22 Capsicum annuum cDNA, mRNA sequence.
GD106494.1:115-138
CCTCTTTTATCCTTTAGTCAGAACAACTGC115TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS22020B10 KS22 Capsicum annuum cDNA, mRNA sequence.
GD106849.1:115-138
CCTCTTTTATCCTTTAGTCAGAACAACTGC115TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS22020B12 KS22 Capsicum annuum cDNA, mRNA sequence.
GD106851.1:70-93
CCTCTTTTATCCTTTAGTCAGAACAACTGC70TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS22046E07 KS22 Capsicum annuum cDNA, mRNA sequence.
GD109292.1:115-138
CCTCTTTTATCCTTTAGTCAGAACAACTGC115TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS22046F09 KS22 Capsicum annuum cDNA, mRNA sequence.
GD109306.1:70-93
CCTCTTTTATCCTTTAGTCAGAACAACTGC70TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS22052D07 KS22 Capsicum annuum cDNA, mRNA sequence.
GD109844.1:70-93
CCTCTTTTATCCTTTAGTCAGAACAACTGC70TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS22064A06 KS22 Capsicum annuum cDNA, mRNA sequence.
GD110933.1:70-93
CCTCTTTTATCCTTTAGTCAGAACAACTGC70TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS25035D01 KS25 Capsicum annuum cDNA, mRNA sequence.
GD126948.1:38-61
GCTCTTTTATCCTTTAGTCAGAACAACTGC38TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS25056D01 KS25 Capsicum annuum cDNA, mRNA sequence.
GD128885.1:46-69
CCTCTTTTATCCTTTAGTCAGAACAACTGC46TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS25059M04 KS25 Capsicum annuum cDNA, mRNA sequence.
GD129229.1:46-69
CCTCTTTTATCCTTTAGTCAGAACAACTGC46TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
KS26008D08 KS26 Capsicum annuum cDNA, mRNA sequence.
GD130509.1:43-66
CCTCTTTTATCCTTTAGTCAGAACAACTGC43TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:265861568-265861591
CCTCTTTTATCCTTTAGTCAGAACAACTGC265861568TACTACAACAACAATGGCAACTCCATTTTCGTGTTTTTGTTCTGCTCCAGTTCA
TSA: Capsicum annuum MGMT_Contig9788, mRNA sequence.
JW060032.1:626-649
TGAACTGGAGCAGAACAAAAACACGAAAAT626GGAGTTGCCATTGTTGTTGTAGTAGCAGTTGTTCTGACTAAAGGATAAAAGAGG
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:26883189-26883212
TGAACTGGAGCAGAACAAAAACACGAAAAT26883189GGAGTTGCCATTGTTGTTGTAGTAGCAGTTGTTCTGACTAAAGGATAAAAGAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tactacaacaacaatggcaactcc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tactacaacaacaatggcaactcc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.367 | 1.358 | search_plus_done; http://172.18.8.135:50400/match?q=TACTACAACAACAATGGCAACTCC&k=0&no_gap=0&offset=0&limit=50
1.430 | 0.064 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGTTGCCATTGTTGTTGTAGTA&k=0&no_gap=0&offset=0&limit=28
1.432 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).