GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:23:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

0135194 Brassica napus Root - drought Brassica napus cDNA, mRNA sequence.
EV220086.1:147-165
GGGCTCGTCTCTCCATAACGGACACCACCG147TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAACATGTG
BOGXW70TF BOGX Brassica oleracea genomic clone BOGXW70, genomic survey sequence.
BH547739.1:621-639
GGGCTCGTCTCTCCATAACAGACACCACCG621TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAACATGTG
17-L109021-1083-036-A06-ccfw IGS-SCF-1083 Vitis-hybrid 'Boerner' BAC genomic library Vitis riparia x Vitis cinerea genomic clone IGS-SCF-1083-036-A06 5', genomic survey sequence.
KG667258.1:26-44
CAAGAGATAAACAAGTGCATCTCCA26TAGACGGATATCACGTGCCTTACCAAGTGTTGGCTCAAGTGACTTGAAG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:315296-315314
GGGCACGTCTGTCAATAACAGACACCACCG315296TAGACGGATATCACGTGCCGGCTGGGACAACCGCGATGGTCAACATGTG
Camelina sativa cultivar CO46 chromosome 17.
CP131547.1:418923-418941
GGGCACGCCTCTCTATAACAGACACCACCG418923TAGACGGATATCACGTGCCGGCTGGGACCACCGCTATGGTTAACATGTG
Camelina sativa cultivar CO46 chromosome 3.
CP131552.1:446343-446361
GGGCACGCCTCTCTATAACAGACACCACCG446343TAGACGGATATCACGTGCCAGCTGGGACCACCGCCATGGTTAACATGTG
Capsella bursa-pastoris isolate WGS_leaf chromosome 1.
CP144183.1:343456-343474
GGGCACGCCTCTCCATAACGGACACCACCG343456TAGACGGATATCACGTGCCGGAAGGGACCACCGCCATGGTTAACATGTG
Capsella bursa-pastoris isolate WGS_leaf chromosome 9.
CP144191.1:336795-336813
GGGCACGCCTCTCTATAACGGACACCACCG336795TAGACGGATATCACGTGCCGGAAGGGACCACCGCCATGGTTAACATGTG
Brassica napus genome assembly, chromosome: A10.
HG994364.1:345459-345477
GGGCTCGTCTCTCCATAACGGACACCACCG345459TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAACATGTG
Brassica napus genome assembly, chromosome: C05.
HG994369.1:383937-383955
GGGCTCGTCTCTCCATAACAGACACCACCG383937TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAACATGTG
Brassica napus cytochrome P450 family 78 subfamily A polypeptide 8 (CYP78A8) gene, complete cds.
JQ004027.1:1306-1324
GGGCTCGTCTCTCCATAACAGACACCACCG1306TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAACATGTG
Brassica rapa genome, scaffold: A10.
LR031577.1:364983-365001
GGGCTCGTCTCTCCATAACGGACACCACCG364983TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAACATGTG
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:352779-352797
GGGCTCGTCTCTCCATAACGGACACCACCG352779TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAACATGTG
Arabidopsis arenosa genome assembly, chromosome: 1.
LR999451.1:438974-438992
GGGCACGCCTCTCTATAACAGACACCACCG438974TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAATATGTG
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:365441-365459
GGGCTCGTCTCTCCATAACGGACACCACCG365441TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAACATGTG
Isatis tinctoria cytochrome P450 78A8 (CYP78A8) gene, complete cds.
MT145862.1:1332-1350
GGGCGCGTCTCTCGATAACAGACACCACCG1332TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAACATGTG
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:24539627-24539645
GGGCACGTCTCTCAATAACAGAGACCACCG24539627TAGACGGATATCACGTGCCGGCTGGGACAACCGCGATGGTCAACATGTG
Cardamine flexuosa genome assembly, chromosome: 1.
OY743214.1:394510-394528
GGGCACGCCTCTCTATAACAGACACCACCG394510TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATAGTCAACATGTG
Cochlearia excelsa genome assembly, chromosome: 3.
OY748329.1:211583-211601
GGGCCCGTCTCTCTATAACAGACACAACCG211583TAGACGGATATCACGTGCCAGCTGGGACCACCGCGATGGTCAACATGTG
Lepidium didymum genome assembly, chromosome: 2.
OY986992.1:366457-366475
GGGCACGACTCTCTATTACAGACACAGCCG366457TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAACATGTG
Cardamine chenopodiifolia genome assembly, chromosome: 1.
OZ000459.1:378782-378800
GGGCACGCCTCTCTATTACAGATACCATCG378782TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAACATGTG
Cardamine chenopodiifolia genome assembly, chromosome: 17.
OZ000475.1:331540-331558
GGGCACGCCTCTCAATAACAGACACCACCG331540TAGACGGATATCACGTGCCGGCTGGGACCACCGCGATGGTCAACATGTG
Brassica napus mRNA, clone: BdlSH384, expressed in excised vascular bundle.
CJ999610.1:331-349
CCCACATGTTGACATCGCGGTGGTCCAGCC331GGCACGTGATATCCGTCTACNGGTGGTGTCGTTATGGAGAGACGAGCCC
0103941 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV202788.1:533-551
CACATGTTGACCATCGCGGTGGTCCCAGCC533GGCACGTGATATCCGTCTACGGTGGTGTCTGTTATGGAGAGACGAGCCC
0134882 Brassica napus Root - drought Brassica napus cDNA, mRNA sequence.
EV219774.1:535-553
CACATGTTGACCATCGCGGTGGTCCCAGCC535GGCACGTGATATCCGTCTACGGTGGTGTCCGTTATGGAGAGACGAGCCC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_10173.
FX685264.1:434-452
CACATGTTAACCATCGCGGTTGTCCCAGCC434GGCACGTGATATCCGTCTACGGTGGTCTCTGTTATTGAGAGACGTGCCC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_24223.
FX695608.1:506-524
CACATGTTGACCATCGCGGTGGTCCCAGCC506GGCACGTGATATCCGTCTACGGTGGTGTCCGTTATGGAGAGACGAGCCC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5993.
FX698050.1:214-232
CACATGTTGACCATCGCGGTTGTCCCAGCC214GGCACGTGATATCCGTCTACGGTGGTGTCTGCTATTGAGAGACGTGCCC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_29721.
FX730272.1:464-482
CACATGTTGACCATCGCGGTTGTCCCAGCC464GGCACGTGATATCCGTCTACGGTGGTGTCTGCTATTGAGAGACGTGCCC
TSA: Chorispora bungeana T_17635 mRNA sequence.
KA054465.1:234-252
CACATGTTGACCATTGCAGTGGTCCCAGCT234GGCACGTGATATCCGTCTACGGTTGTGTCGGTTATAGAGAGACGGGCCC
BOGAJ62TR BOGA Brassica oleracea genomic clone BOGAJ62, genomic survey sequence.
BH250286.1:405-423
CACATGTTGACCATCGCGGTTGTCCCAGCC405GGCACGTGATATCCGTCTACGGTGGTGTCTGTTATTGACAGACGTGCCC
KBrH046C07R KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH046C07, genomic survey sequence.
DX909795.1:354-372
CACATGTTGACCATCGCGGTGGTCCCAGCC354GGCACGTGATATCCGTCTACGGTGGTGTCCGTTATGGAGAGACGAGCCC
BoCig87O02/F BOCIG Brassica oleracea genomic, genomic survey sequence.
FI569205.1:361-379
CACATGTTGACCATCGCGGTTGTCCCAGCC361GGCACGTGATATCCGTCTACGG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB063A04, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC232510.1:53196-53214
CACATGTTGACCATCGCGGTTGTCCCAGCC53196GGCACGTGATATCCGTCTACGGTGGTGTCTGCTATTGAGAGACGTGCCC
Brassica rapa subsp. pekinensis clone KBrB085F20, complete sequence.
FP340617.1:72859-72877
CACATGTTGACCATCGCGGTTGTCCCAGCC72859GGCACGTGATATCCGTCTACGGTGGTGTCTGCTATTGAGAGACGTGCCC
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69248886-69248904
CACATGTTGACCATCGCGGTTGTCCCAGCC69248886GGCACGTGATATCCGTCTACGGTGGTGTCTGCTATTGAGAGACGTGCCC
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:26381220-26381238
CACATGTTGACCATCGCGGTGGTCCCAGCC26381220GGCACGTGATATCCGTCTACGGTGGTGTCCGTTATGGAGAGACGAGCCC
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:58928019-58928037
CACATGTTGACCATCGCGGTGGTCCCAGCC58928019GGCACGTGATATCCGTCTACGGTGGTGTCTGTTATGGAGAGACGAGCCC
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53189976-53189994
CACATGTTGACCATCGCGGTTGTCCCAGCC53189976GGCACGTGATATCCGTCTACGGTGGTGTCTGCTATTGAGAGACGTGCCC
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41361222-41361240
CACATGTTGACCATCGCGGTTGTCCCAGCC41361222GGCACGTGATATCCGTCTACGGTGGTGTCTGTTATTGACAGACGTGCCC
Brassica rapa genome, scaffold: A09.
LR031568.1:57351623-57351641
CACATGTTGACCATCGCGGTTGTCCCAGCC57351623GGCACGTGATATCCGTCTACGGTGGTGTCTGCTATTGAGAGACGTGCCC
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50609559-50609577
CACATGTTGACCATCGCGGTTGTCCCAGCC50609559GGCACGTGATATCCGTCTACGGTGGTGTCTGTTATTGACAGACGTGCCC
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:19493324-19493342
CACATGTTGACCATCGCGGTTGTCCCAGCC19493324GGCACGTGATATCCGTCTACGGTGGTCTCTGTTATTGAGAGACGTGCCC
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67875710-67875728
CACATGTTGACCATCGCGGTTGTCCCAGCC67875710GGCACGTGATATCCGTCTACGGTGGTGTCTGCTATTGAGAGACGTGCCC
Thlaspi arvense genome assembly, chromosome: 1.
OU466857.2:65073622-65073640
CACATGTTGACCATCGCGGTGGTCCCAGCC65073622GGCACGTGATATCCGTCTACGATGGTGTCTGTTATAGAGAGACGCGCCC
Barbarea vulgaris genome assembly, chromosome: 3.
OY763889.1:30897778-30897796
CACATGTTGACCATCGCGGTGGTCCCAGCC30897778GGCACGTGATATCCGTCTACGATGGTGTCTGTTATAGACAGGCGTGCCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tagacggatatcacgtgcc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tagacggatatcacgtgcc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.316 | 0.307 | search_plus_done; http://172.18.8.135:50400/match?q=TAGACGGATATCACGTGCC&k=0&no_gap=0&offset=0&limit=50
0.694 | 0.378 | search_minus_done; http://172.18.8.135:50400/match?q=GGCACGTGATATCCGTCTA&k=0&no_gap=0&offset=0&limit=28
0.709 | 0.016 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).