GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 04:34:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil mRNA, clone: JMFN031H17, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY932629.1:227-249
TTTTTGCGCTAAATCATCTTGAATGTCCGC227TATCACCACCTTAGCTCCATGCCGGGAAAACAGCCTCGCTGCCTTCTCGCCGA
Ipomoea nil cDNA clone:jm27h15, 5' end, single read.
BJ559054.1:173-195
TCGGCGAGAAGGCAGCGAGGCTGTTTTCCC173GGCATGGAGCTAAGGTGGTGATAGCGGACATTCAAGATGATTTAGCGCAAAAA
Ipomoea nil mRNA, clone: jm49j01, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY926097.1:173-195
TCGGCGAGAAGGCAGCGAGGCTGTTTTCCC173GGCATGGAGCTAAGGTGGTGATAGCGGACATTCAAGATGATTTAGCGCAAAAA
Polytrichum commune genome assembly, chromosome: 2.
OX485804.1:33884830-33884852
CACGACGGGGGAATCTACGAGGAGATGGCG33884830GGCATGGAGCTAAGGTGGTGATATGACATGGGCAATAGGACAAAGTAAGATGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tatcaccaccttagctccatgcc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tatcaccaccttagctccatgcc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.210 | 0.202 | search_plus_done; http://172.18.8.135:50400/match?q=TATCACCACCTTAGCTCCATGCC&k=0&no_gap=0&offset=0&limit=50
0.390 | 0.180 | search_minus_done; http://172.18.8.135:50400/match?q=GGCATGGAGCTAAGGTGGTGATA&k=0&no_gap=0&offset=0&limit=49
0.392 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).