GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 18:28:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Ipomoea nil cDNA clone:jmsf11d03, 3' end.
CJ756021.1:384-407
TTCTCCTCCCCTTTAAAAATGATACGGACA384TATGGGTTAGTATGGTGCTTTCCTTCAACATCTTCAGCTTCATGGATTAATACT
Ipomoea nil cDNA clone:jmsf5k01, 3' end.
CJ768417.1:332-355
TTCTCCTCCCCTTTAAAAATGATACGGACA332TATGGGTTAGTATGGTGCTTTCCTTCAACATCTTCAGCTTCATGGATTAATACT
TSA: Capsicum annuum MGMT_Contig2546, mRNA sequence.
JW052790.1:851-874
CTCTCCTCCCCTTTGAAAATAATCCTGACA851TATGGGTTAGTATGGTGCTTTCCTTCAACATCTTGAGCTTCGTGGACCATAATC
Capsicum annuum Takanotsume DNA, chromosome 8, sequence.
AP026703.1:173839520-173839543
CTCTCCTCCCCTTTGAAAATAATCCTGACA173839520TATGGGTTAGTATGGTGCTTTCCTTCAACATCTTGAGCTTCGTGGACCATAATC
Ipomoea trifida cultivar NCNSP0306 chromosome 10.
CP025653.1:24614012-24614035
TTCTCCTCCCCTTTAAAAATGATACGGACA24614012TATGGGTTAGTATGGTGCTTTCCTTCAACATCTTCAGCTTCATGGATTAATACT
Ipomoea triloba cultivar NCNSP0323 chromosome 10.
CP025669.1:28942119-28942142
TTCTCCTCCCCTTTAAAAATGATACGGACA28942119TATGGGTTAGTATGGTGCTTTCCTTCAACATCTTCAGCTTCATGGATTAATACT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 8.
CP124724.1:185632563-185632586
CTCTCCTCCCCTTTGAAAATAATCCTGACA185632563TATGGGTTAGTATGGTGCTTTCCTTCAACATCTTGAGCTTCGTGGACCATAATC
KS21003F04 KS21 Capsicum annuum cDNA, mRNA sequence.
GD099464.1:111-134
GATTATGGTCCACGAAGCTCAAGATGTTGA111AGGAAAGCACCATACTAACCCATATGTCAGGATTATTTTCAAAGGGGAGGAGAG
KS24010D04 KS24 Capsicum annuum cDNA, mRNA sequence.
GD118809.1:318-341
GATTATGGTCCACGAAGCTCAAGATGTTGA318AGGAAAGCACCATACTAACCCATATGTCAGGATTATTTTCAAAGGGGAGGAGAG
KS26025H01 KS26 Capsicum annuum cDNA, mRNA sequence.
GD132002.1:68-91
GATTATGGTCCACGAAGCTCAAGATGTTGA68AGGAAAGCACCATACTAACCCATATGTCAGGATTATTTTCAAAGGGGAGGAGAG
TSA: Ipomoea batatas Contig_6353.Ipbalsr mRNA sequence.
JP110941.1:584-607
AGTATTAATCCATGAAGCTGAAGATGTTGA584AGGAAAGCACCATACTAACCCATATGTCCGTATCATTTTTAAAGGGGAGGAGAA
Verbena officinalis genome assembly, chromosome: 4.
OY292388.1:458675-458698
GGTTACAGTGCATGAAGCTCAAGATGTTGA458675AGGAAAGCACCATACTAACCCATATGTGCGCATCATTTTCAGAGGAGAGGAGCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tatgggttagtatggtgctttcct
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tatgggttagtatggtgctttcct | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.418 | 0.409 | search_plus_done; http://172.18.8.135:50400/match?q=TATGGGTTAGTATGGTGCTTTCCT&k=0&no_gap=0&offset=0&limit=50
0.728 | 0.311 | search_minus_done; http://172.18.8.135:50400/match?q=AGGAAAGCACCATACTAACCCATA&k=0&no_gap=0&offset=0&limit=43
0.732 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).