GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:21:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:5029020-5029039
GCATCTGGTTTTTTATTGATACTTTGTATA5029020TATTCGGGAGGCATGGTATGTTAGATATTAGAGTATTTGGTAGCGTCACG
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:25567392-25567411
GCATCTGGTTTTTTATTGATACTTTGTATA25567392TATTCGGGAGGCATGGTATGTTAGATATTAGAGTATTTGGTAGCGTCACG
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:26079686-26079705
GCATCTGGTTTTTTATTGATACTTTGTATA26079686TATTCGGGAGGCATGGTATGTTAGATATTAGGGTATTTGGTAGCGTCACA
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141959.1:24932348-24932367
GCATATGGTTTTTGATTGATACTTTGTATA24932348TATTCGGGAGGCATGGTATGTTAGATATTAGGGTATTTGGTAGCGTCACG
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143374.1:32446587-32446606
GCATCTGGTTTTTGATTGATAATTTGTATA32446587TATTCGGGAGGCATGGTATGTTAGATATTAGGGTATTTGGTAGCGTCACA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:8196587-8196606
GCATCTGGTTTTTGATTGATACTTTGTATA8196587TATTCGGGAGGCATGGTATGTTAGATATTAGGGTATTTGGTAGCGTCATG
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143382.1:27041893-27041912
TGCATCTGGTTTTTTATGATACTTTGTATA27041893TATTCGGGAGGCATGGTATGTTAGATATTAGGGTATTTGGTAGCGTCACG
Malus sylvestris genome assembly, chromosome: 17.
OU696519.1:32135329-32135348
GCATCTGGTTTTTTATTGATACTTTGTATA32135329TATTCGGGAGGCATGGTATGTTAGATATTAGGGTATTTGGTAGCGTCACG
Malus domestica genome assembly, chromosome: 17.
OU696693.1:32232572-32232591
GCATCTGGTTTTTGATTGATACTTTGTATA32232572TATTCGGGAGGCATGGTATGTTAGATATTAGGGTATTTGGTAGCGTCACG
Malus domestica genome assembly, chromosome: 17.
OU744969.1:32015945-32015964
GCATCTGGTTTTTTATTGATACTTTGTATA32015945TATTCGGGAGGCATGGTATGTTAGATATTAGGGTATTTGGTAGCGTCACA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:28293784-28293803
GCATCTGGTTTTTGATTGATACTTTGTATA28293784TATTCGGGAGGCATGGTATGTTAGATATTAAGGTATTTGGTAGGGTCACG
Malus domestica genome assembly, chromosome: 17.
OU745007.1:32192617-32192636
GCATCTGGTTTTTGATTGATAATTTGTATA32192617TATTCGGGAGGCATGGTATGTTAGATATTAGGGTATTTGGTAGCGTCACA
Malus x robusta genome assembly, chromosome: 17.
OY720341.1:11569401-11569420
GCATCTAGTTTTTGATTGATACTTTGTATA11569401TATTCGGGAGGCATGGTATGTTATATATTAGGGTATTTGGTAGCGTCACG
Pecten maximus genome assembly, chromosome: 14.
LR736851.1:11605543-11605562
CTTAAAATCTCACTATCACCAGAACATTGT11605543TATTCGGGAGGCATGGTATGATCTAAATTGGCCCAGTATGTATTTTTATA
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:2373657-2373676
CGTGACGCTACCAAATACCCTAATATCTAA2373657CATACCATGCCTCCCGAATATATACAAAGTATCAATAAAAAACCAGATGC
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:19456561-19456580
CGTGACGCTACCAAATACCCTAATATCTAA19456561CATACCATGCCTCCCGAATATATACAAAGTATCAATCAAAAACCAGATGC
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:1846631-1846650
TGTGACGCTACCAAATACCCTAATATCTAA1846631CATACCATGCCTCCCGAATATATACAAAGTATCAATAAAAAACCAGATGC
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:28986347-28986366
CGTGACGCTACCAAATACTCTAATATCTAA28986347CATACCATGCCTCCCGAATATATACAAAGTATCAATAAAAAACCAGATGC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:20254633-20254652
CGTGACGCTACCAAATACCCTAATATCTAA20254633CATACCATGCCTCCCGAATATATACAAAGTATCAATCAAAAAACCAGATG
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141986.1:32329942-32329961
CGTGACGCTACCAAATACCCTAATATCTAA32329942CATACCATGCCTCCCGAATATATACAAAGTATTAATAAAAAACCAGATGC
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:19109593-19109612
CGTGACGCTACCAAATACCCTAATATCTAA19109593CATACCATGCCTCCCGAATATATACAAAGTATCAATAAAAAACCAGATGC
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:28696753-28696772
CGTGACGCTACCAAATACCCTAATATCTAA28696753CATACCATGCCTCCCGAATATATACAAAGTATCAATCAAAAACCAGATGC
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:16020929-16020948
CGTGACGCTACCAAATACCCTAATATCTAA16020929CATACCATGCCTCCCGAATATATACAAAGTATCAATCAAAAACCAGATGC
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:7890275-7890294
CGTGACGCTACCAAATACCCTAATATCTAA7890275CATACCATGCCTCCCGAATATATACAAAGTATCAATAAAAAACCAGATGC
Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:19202270-19202289
CGTGACGCTACCAAATACCCTAATATCTAA19202270CATACCATGCCTCCCGAATATATACAAAGTATCAATCAAAAACCAGATGC
Malus domestica genome assembly, chromosome: 4.
OU696680.1:19294948-19294967
CATGACGCTACCAAATACCCTAATATCTAA19294948CATACCATGCCTCCCGAATATATACAAAGTATCAATCAAAAACCAGATGC
Malus domestica genome assembly, chromosome: 4.
OU744545.1:19292477-19292496
CGTGACGCTACCAAATACCCTAATATATAA19292477CATACCATGCCTCCCGAATATATACAAAGTATCAATCAAAAACTAGATGC
Malus domestica genome assembly, chromosome: 17.
OU744558.1:9146245-9146264
TGTGACGCTACCAAATACCCTAATATCTAA9146245CATACCATGCCTCCCGAATATATACAAAGTATCAATAAAAAACCAGATGC
Malus domestica genome assembly, chromosome: 4.
OU744956.1:19488120-19488139
CGTGACGCTACCAAATACCCTAATATCTAA19488120CATACCATGCCTCCCGAATACATACAAAGTATCAATCAAAAACCAGATGC
Malus domestica genome assembly, chromosome: 4.
OU744994.1:19436614-19436633
CGTGACGCTACCAAATACCCTAATATCTAA19436614CATACCATGCCTCCCGAATATATACAAAGTATCAATAAAAAACCAGATGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tattcgggaggcatggtatg
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tattcgggaggcatggtatg | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.358 | 0.350 | search_plus_done; http://172.18.8.135:50400/match?q=TATTCGGGAGGCATGGTATG&k=0&no_gap=0&offset=0&limit=50
0.476 | 0.118 | search_minus_done; http://172.18.8.135:50400/match?q=CATACCATGCCTCCCGAATA&k=0&no_gap=0&offset=0&limit=36
0.486 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).