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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:17:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

WS02527.BR_D04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_D04 5', mRNA sequence.
DT479863.1:316-340
TCCTGCGAAGTGAGAATGCACGAAGATATG316TCAGGCAGCTTCCACAATACCCAAGGCAAAATTTTGCTGCTAGATTTCCTAATAT
WS02025.B21_F11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02025_F11 3', mRNA sequence.
CV264738.1:415-439
ATATTAGGAAATCTAGCAGTACAATTTTGC415CTTGGGTATTGTGGAAGCTGCCTGACATATCTT
WS0146.B21_E01 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides cDNA clone WS0146_E01 3', mRNA sequence.
CV278385.1:485-509
ATATTATGAAATCTAGCAGCAAAATTTTGC485CTTGGGTATTGTGGAAGCTGCCTGACATATCTTCGTGAATTCTCACTTCGCACGA
Populus nigra mRNA, clone: PnFL2-104_J22, 3'end.
DB910909.1:338-362
ATATTAGGAAATCTAGCAGCAAAATTTTGC338CTTGGGTATTGTGGAAGCTGCCTGACATATCTTCGTGCATTCTCACTTCGCAGGA
WS02519.B21_C21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_C21 3', mRNA sequence.
DT482202.1:728-752
ATATTAGGAAATCTAGCAGCAAAATTTTGC728CTTGGGTATTGTGGAAGCTGCCTGACATATCTTCGTGCATTCTCACTTCGCAGGA
WS02521.B21_F13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_F13 3', mRNA sequence.
DT482991.1:712-736
ATATTAGGAAATCTAGCAGCAAAATTTTGC712CTTGGGTATTGTGGAAGCTGCCTGACATATCTTCGTGCATTCTCACTTCGCAGGA
WS02527.B21_D04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_D04 3', mRNA sequence.
DT485066.1:520-544
ATATTAGGAAATCTAGCAGCAAAATTTTGC520CTTGGGTATTGTGGAAGCTGCCTGACATATCTTCGTGCATTCTCACTTCGCAGGA
WS02551.C21_J02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02551_J02 3', mRNA sequence.
DT492611.1:464-488
ATATTAGGAAATCTAGCAGCAAAATTTTGC464CTTGGGTATTGTGGAAGCTGCCTGACATATCTTCGTGCATTCTCACTTCGCAGGA
WS02046.C21_E07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02046_E07 3', mRNA sequence.
DT525777.1:453-477
ATATTAGGAAATCTAGCAGCAAAATTTTGC453CTTGGGTATTGTGGAAGCTGCCTGACATATCTTCGTGCATTCTCACTTCGCAGGA
Populus nigra genome assembly, chromosome: 4.
OX637675.1:12252774-12252798
ATATTAGGAAATCTAGCAGCAAAATTTTGC12252774CTTGGGTATTGTGGAAGCTGCCTGACATATCTTCGTGCATTCTCACTTCGCAGGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tcaggcagcttccacaatacccaag
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tcaggcagcttccacaatacccaag | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.197 | 0.188 | search_plus_done; http://172.18.8.135:50400/match?q=TCAGGCAGCTTCCACAATACCCAAG&k=0&no_gap=0&offset=0&limit=50
0.788 | 0.591 | search_minus_done; http://172.18.8.135:50400/match?q=CTTGGGTATTGTGGAAGCTGCCTGA&k=0&no_gap=0&offset=0&limit=49
0.794 | 0.006 | cgi_end;

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