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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:16:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141965.1:29457594-29457614
CGCAAGTCCCCCTATAAGAATTCCTTGCTC29457594TCCATCAAAACCAAGTTTTCGTTGTCCACCTTTCTCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141982.1:30235659-30235679
CGCAAGTCCCCCTATAAGAATTCCTTGCTC30235659TCCATCAAAACCAAGTTTTCGTTGTCCACCTCTCTCTCTCTCTCTCTCTCT
Lepeophtheirus salmonis strain IoA-00 genome assembly, chromosome: 14.
HG994593.1:49717620-49717640
CAAATTGGTTTTGAGCTGTTTTCTCGTGAT49717620TCCATCAAAACCAAGTTTTCGTAATTTAGTTGTTTTGGGTTCCATTCTTTG
Lepeophtheirus salmonis strain IoA-00 genome assembly, chromosome: 14.
LR794197.1:49717620-49717640
CAAATTGGTTTTGAGCTGTTTTCTCGTGAT49717620TCCATCAAAACCAAGTTTTCGTAATTTAGTTGTTTTGGGTTCCATTCTTTG
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141922.1:11275121-11275141
AGAGAGAGAGAGAGAGAGAGAGGTGGACAA11275121CGAAAACTTGGTTTTGATGGAGAGCAAGGAATTCTTATAGGGGGACTTGCG
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143370.1:12080048-12080068
AGAGAGAGAGAGAGAGAGAGAGGTGGACAA12080048CGAAAACTTGGTTTTGATGGAGAGCAAGGAATTCTTATAGGGGGACTTGCG
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143387.1:10759755-10759775
AGAGAGAGAGAGAGAGAGAGAGGTGGACAA10759755CGAAAACTTGGTTTTGATGGAGAGCAAGGAATTCTTATAGGGGGACTTGCG
Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:11709996-11710016
AGAGAGAGAGAGAGAGAGAGAGGTGGACAA11709996CGAAAACTTGGTTTTGATGGAGAGCAAGGAATTCTTATAGGGGGACTTGCG
Malus domestica genome assembly, chromosome: 13.
OU696689.1:12055423-12055443
AGAGAGAGAGAGAGAGAGAGAGGTGGACAA12055423CGAAAACTTGGTTTTGATGGAGAGCAAGGAATTCTTATAGGGGGACTTGCG
Malus x robusta genome assembly, chromosome: 9.
OY720333.1:11662139-11662159
AGAGAGAGAGAGAGAGAGAGAGGTGGACAA11662139CGAAAACTTGGTTTTGATGGAGAGCAAGGAATTCTTATAGGGGGACTTGCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tccatcaaaaccaagttttcg
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tccatcaaaaccaagttttcg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.342 | 0.333 | search_plus_done; http://172.18.8.135:50400/match?q=TCCATCAAAACCAAGTTTTCG&k=0&no_gap=0&offset=0&limit=50
0.437 | 0.095 | search_minus_done; http://172.18.8.135:50400/match?q=CGAAAACTTGGTTTTGATGGA&k=0&no_gap=0&offset=0&limit=46
0.441 | 0.004 | cgi_end;

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