GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 15:59:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil DNA, BAC clone: JMHiBa-066M05, sequence: JMHiBa-066M05.g.
GA972917.1:590-613
GTTTCCGGCGGAGAACGCCGCGTTTCCTTT590TCCCTTAGCTTCGTCTGCCATAAGTCTCTTCCTATCTCTCTCTCTCTCTCTCTC
Ipomoea trifida cultivar NCNSP0306 chromosome 8.
CP025651.1:536024-536047
GTTTCCGGCGGAGAACGCCGCGTTTCCTTT536024TCCCTTAGCTTCGTCTGCCATAAGTCTCTTCTCCTCTCTCTCTCTCTCTATCTC
Ipomoea triloba cultivar NCNSP0323 chromosome 8.
CP025667.1:635314-635337
GTTTCCGGCGGAGAACGCCGCGTTTCCTTT635314TCCCTTAGCTTCGTCTGCCATAAGTCTCTTCTCCTCTCTCTCTCTCTATCTCTC
Ipomoea nil mRNA, clone: jm50n05, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY926555.1:12-35
ATAGGAAGAGA12CTTATGGCAGACGAAGCTAAGGGAAAAGGAAACGCGGCGTTCTCCGCCGGAAAC
Ipomoea nil mRNA, clone: JMFS026F05, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY937943.1:12-35
ATAGGAAGAGA12CTTATGGCAGACGAAGCTAAGGGAAAAGGAAACGCGGCGTTCTCCGCCGGAAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tcccttagcttcgtctgccataag
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tcccttagcttcgtctgccataag | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.120 | 0.111 | search_plus_done; http://172.18.8.135:50400/match?q=TCCCTTAGCTTCGTCTGCCATAAG&k=0&no_gap=0&offset=0&limit=50
0.320 | 0.201 | search_minus_done; http://172.18.8.135:50400/match?q=CTTATGGCAGACGAAGCTAAGGGA&k=0&no_gap=0&offset=0&limit=47
0.322 | 0.001 | cgi_end;

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