GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:15:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Ipomoea batatas Contig_2272.Ipbalsr mRNA sequence.
JP106860.1:1488-1511
ACATCAACCAGCACAGATTTAGTCATCTCC1488TCGGCAATCCAGTGAACACATAGTGGAACCAGTAAGTGCACCAATGGCCTCAGC
TSA: Ipomoea batatas Contig_27139.Ipbalsr mRNA sequence.
JP131727.1:298-321
ATATCAACCAGCATTGGCTTTGACATCTCC298TCGGCAATCCAGTGAACACATAGTGGGACTAGCAAATGCACCAATGGCTTAAGC
Ipomoea trifida cultivar NCNSP0306 chromosome 12.
CP025655.1:20205698-20205721
ATATCAACCAGCATTGGCTTTGACATCTCC20205698TCGGCAATCCAGTGAACACATAGTGGGACTAGCAAATGCACCAATGGCTTAAGC
Ipomoea triloba cultivar NCNSP0323 chromosome 12.
CP025671.1:23853115-23853138
ATATCAACCAGCATTGGCTTTGACATCTCC23853115TCGGCAATCCAGTGAACACATAGTGGGACTAGCAAATGCACCAATGGCTTAAGC
Ipomoea nil cDNA clone:jm12i07, 5' end, single read.
BJ553928.1:109-132
GCTGAGGCCATTAGTGCACTTACTGGTTCC109ACTATGTGTTCACTGGATTGCCGAGGAGATGACTANATCTGTGCTGGTTGATGT
Ipomoea nil cDNA clone:jm26b06, 5' end, single read.
BJ558593.1:109-132
GCTGAGGCCATTAGTGCACTTACTGGTTCC109ACTATGTGTTCACTGGATTGCCGAGGAGATGACTANATCTGTGCTGGTTGATGT
Ipomoea nil cDNA clone:jm31p17, 5' end, single read.
BJ560833.1:10-33
ACTGGTTCC10ACTATGTGTTCACTGGATTGCCGAGGAGATGACTAAATCTGTGCTGGTTGATGT
Ipomoea nil cDNA clone:jm6d16, 5' end, single read.
BJ564757.1:102-125
GCTGAGGCCATTAGTGCACTTACTGGTTCC102ACTATGTGTTCACTGGATTGCCGAGGAGATGACTANATCTGTGCTGGNTGATGT
Ipomoea nil cDNA clone:jmsf16i06, 5' end.
CJ739288.1:130-153
GCTGAGGCCATTAGTGCACTTACTGGTTCC130ACTATGTGTTCACTGGATTGCCGAGGAGATGACTAANTCTGTGCTGGTTGATGT
Ipomoea nil cDNA clone:jmsf49i09, 5' end.
CJ750000.1:151-174
GCTTAAGCCATTGGTGCATTTGCTAGTCCC151ACTATGTGTTCACTGGATTGCCGAGGAGATGTCAAAGCCAATGCTGGTTGATAT
Ipomoea nil mRNA, clone: jm51k08, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY926852.1:127-150
GCTGAGGCCATTAGTGCACTTACTGGTTCC127ACTATGTGTTCACTGGATTGCCGAGGAGATGACTAAATCTGTGCTGGTTGATGT
Ipomoea trifida cultivar NCNSP0306 chromosome 5.
CP025648.1:5725673-5725696
GCTGAGGCCATTGGTGCACTTACTGGTTCC5725673ACTATGTGTTCACTGGATTGCCGAGGAGATGACTAAGTCTGTGCTGGTTGATGT
Ipomoea triloba cultivar NCNSP0323 chromosome 5.
CP025664.1:5218730-5218753
GCTGAGGCCATTGGTGCACTTACTGGTTCC5218730ACTATGTGTTCACTGGATTGCCGAGGAGATGACTAAATCTGTGCTGGTTGATGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tcggcaatccagtgaacacatagt
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tcggcaatccagtgaacacatagt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.381 | 0.372 | search_plus_done; http://172.18.8.135:50400/match?q=TCGGCAATCCAGTGAACACATAGT&k=0&no_gap=0&offset=0&limit=50
0.700 | 0.319 | search_minus_done; http://172.18.8.135:50400/match?q=ACTATGTGTTCACTGGATTGCCGA&k=0&no_gap=0&offset=0&limit=46
0.706 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).