GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 17:06:51, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BA228d23T3 Solanum tuberosum BAC library Solanum tuberosum genomic clone BA228d23, genomic survey sequence.
CG876891.1:7-29
GTTTAT7TCGTAGGTAAATTTTCAAGGTCCAACCGCAAAATATATATGTTTGACTTGAAA
Solanum tuberosum cultivar RH89-039-16 clone RH125J07, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.
AC240013.1:127808-127830
AGTGATCTTGAATCTTTGACATCTGTTTAT127808TCGTAGGTAAATTTTCAAGGTCCAACCGCAAAATATATATGTTTGACTTGAAT
Solanum tuberosum cultivar RH89-039-16 chromosome 11 clone RH071A13, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC238099.1:45048-45070
ATTCAAGTCAAACATATATATTTTGCGGTT45048GGACCTTGAAAATTTACCTACGAGTAAACAGAGGTCAAAGATTTAAGATCATT
Solanum tuberosum cultivar MSH/14-112 chromosome 11.
CP046691.1:44301872-44301894
ATTCAAGTCAAACATATATATTTTGCGGTT44301872GGACCTTGAAAATTTACCTACGAGTAAAYAGAGGTCAAAGATTYAAGATCAYT
Solanum tuberosum cultivar Solyntus chromosome 11.
CP055244.1:56011993-56012015
TTCAAGTCAAAACATATATATTTTGCAGTT56011993GGACCTTGAAAATTTACCTACGAGTAAACAGATGTCAAAGATTCAAGATCACT
Solanum verrucosum cultivar 11H23 chromosome 11.
CP133622.1:44447348-44447370
ATTCAAGTCAAACATATATATTTTGCGGTT44447348GGACCTTGAAAATTTACCTACGAATAAACAGATGTCAAAGATTCAAGATCACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tcgtaggtaaattttcaaggtcc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tcgtaggtaaattttcaaggtcc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.197 | 0.188 | search_plus_done; http://172.18.8.135:50800/match?q=TCGTAGGTAAATTTTCAAGGTCC&k=0&no_gap=0&offset=0&limit=50
0.310 | 0.113 | search_minus_done; http://172.18.8.135:50800/match?q=GGACCTTGAAAATTTACCTACGA&k=0&no_gap=0&offset=0&limit=48
0.313 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).