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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:06:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 7947 from Patent WO2008034648.
FB788674.1:560-579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Sequence 29469 from Patent WO2008034648.
FB810196.1:560-579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Sequence 65716 from Patent WO2008034648.
FB846443.1:560-579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Sequence 90570 from Patent WO2008034648.
FB871297.1:560-579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Sequence 92318 from Patent WO2008034648.
FB873045.1:560-579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Sequence 138999 from Patent WO2008034648.
FB919726.1:560-579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Sequence 7947 from Patent EP2090662.
HB658733.1:560-579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Sequence 29469 from Patent EP2090662.
HB680255.1:560-579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Sequence 65716 from Patent EP2090662.
HB716502.1:560-579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Sequence 90570 from Patent EP2090662.
HB741356.1:560-579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Sequence 92318 from Patent EP2090662.
HB743104.1:560-579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Sequence 138999 from Patent EP2090662.
HB789785.1:560-579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
HK03G01u Hordeum vulgare cDNA clone 5'sequence; expressed sequence tag;.
AL450601.1:345-364
GGAGCCTCGACGTCGCCGACCTCGTGTCCC345TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
HK04E17u Hordeum vulgare cDNA clone 5'sequence; expressed sequence tag;.
AL450797.1:54-73
GGAGCCTCGACGTCGCCGACCTCGTGTCCC54TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
HVSMEf0019A05f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEf0019A05f, mRNA sequence.
BF259401.2:111-130
GGAGCCTCGACGTCGCCGACCTCGTGTCCC111TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
HVSMEf0020L21f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEf0020L21f, mRNA sequence.
BF259964.1:42-61
GGNACCTCGGCGTCGCCGACCTCGTGTCCC42TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
EBro07_SQ002_M18_R root, 3 week, reduced light, cv Optic, EBro07 Hordeum vulgare subsp. vulgare cDNA clone EBro07_SQ002_M18 5', mRNA sequence.
BI778298.2:159-178
GGAGCCTCGACGTCGCCGACCTCGTGTCCC159TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
EBro08_SQ011_E03_R root, 3 week, drought-stressed, cv Optic, EBro08 Hordeum vulgare subsp. vulgare cDNA clone EBro08_SQ011_E03 5', mRNA sequence.
BQ768208.1:368-387
GGAGCCTCGACGTCGCCGACCTCGTGTCCC368TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
HA03D02r HA Hordeum vulgare subsp. vulgare cDNA clone HA03D02 5-PRIME, mRNA sequence.
BU976129.1:69-88
GGAGCCTCGACGTCGCCGACCTCGTGTCCC69TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. vulgare mRNA, clone: bart57c01, 5' end, expressed in Root.
BY848442.1:373-392
GGAGCCTCGACGTCGCCGACCTCGTGTCCC373TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. vulgare mRNA, clone: bast09g11, 5' end, expressed in Shoot.
BY849532.1:156-175
GGAGCCTCGACGTCGCCGACCTCGTGTCCC156TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
HC07A03w CH Hordeum vulgare cDNA clone HC07A03 5-PRIME, mRNA sequence.
CB866488.1:49-68
GTAGCCTCGACGTCGCCGACCTCGTGTCCC49TCTCCGGCGCCCACACCTTCGCGTCGCCCACTGCCCGGCCTTCGAGGACC
HC09O19w CH Hordeum vulgare cDNA clone HC09O19 5-PRIME, mRNA sequence.
CB868962.1:71-90
GGAGCCTCGACGTCGCCGACCTCGTGTCCC71TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
HC15P18w CH Hordeum vulgare cDNA clone HC15P18 5-PRIME, mRNA sequence.
CB871027.1:579-598
GGAGCCTCGACGTCGCCGACCTCGTGTCCC579TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1042C19, Normalized barley full-length cDNA library from seedling shoot in normal or dark, 5' end sequence.
DK599178.1:376-395
GGAGCCTCGACGTCGCCGACCTCGTGTCCC376TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1060C07, Normalized barley full-length cDNA library from seedling shoot at low temperature, 5' end sequence.
DK605668.1:373-392
GGAGCCTCGACGTCGCCGACCTCGTGTCCC373TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1065C05, Normalized barley full-length cDNA library from unknown condition, 5' end sequence.
DK607444.1:386-405
GGAGCCTCGACGTCGCCGACCTCGTGTCCC386TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv2023L17, Normalized barley full-length cDNA library from unknown condition, 5' end sequence.
DK646127.1:374-393
GGAGCCTCGACGTCGCCGACCTCGTGTCCC374TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv2030N18, Normalized and subtracted barley full-length cDNA library from seedling shoot and root with ABA treatment, 5' end sequence.
DK648600.1:374-393
GGAGCCTCGACGTCGCCGACCTCGTGTCCC374TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv2043H05, Normalized and subtracted barley full-length cDNA library from seedling shoot and root with JA treatment, 5' end sequence.
DK653062.1:328-347
GGAGCCTCGACGTCGCCGACCTCGTGTCCC328TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv2046D07, Normalized and subtracted barley full-length cDNA library from seedling shoot and root on Aluminium stress, 5' end sequence.
DK654066.1:376-395
GGAGCCTCGACGTCGCCGACCTCGTGTCCC376TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv2085H08, Normalized and subtracted barley full-length cDNA library from seedling shoot and root with JA treatment, 5' end sequence.
DK668034.1:376-395
GGAGCCTCGACGTCGCCGACCTCGTGTCCC376TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
HO36L15S HO Hordeum vulgare cDNA clone HO36L15 5-PRIME, mRNA sequence.
DN177675.1:61-80
GGAGCCTCGACGTCGCCGACCTCGTGTCCC61TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
HO36H17S HO Hordeum vulgare cDNA clone HO36H17 5-PRIME, mRNA sequence.
DN177798.1:61-80
GGAGCCTCGACGTCGCCGACCTCGTGTCCC61TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
HO23D12S HO Hordeum vulgare cDNA clone HO23D12 5-PRIME, mRNA sequence.
DN181933.1:220-239
GGAGCCTCGACGTCGCCGACCTCGTGTCCC220TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
HVSMEf0019A05f2 Hordeum vulgare seedling root (etiolated unstressed) cDNA library HVSMEf (HVcDNA0007)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0020K05r, mRNA sequence.
GH216093.1:111-130
GGAGCCTCGACGTCGCCGACCTCGTGTCCC111TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare mRNA for stress-related peroxidase.
AJ003141.1:652-671
GGAGCCTCGACGTCGCCGACCTCGTGTCCC652TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf40j09, mRNA sequence.
AK248518.1:639-658
GGAGCCTCGACGTCGCCGACCTCGTGTCCC639TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001F12.
AK353596.1:639-658
GGAGCCTCGACGTCGCCGACCTCGTGTCCC639TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 4.
CP125976.1:557808295-557808314
GCACGAACAACCAGCCAAAGAACCATCACT557808295TCTCCGGCGCCCACACCTTCCAAACAAACTTTGAGAACTAGTGTTTAAGG
Digitaria exilis genome assembly, chromosome: 4A.
LR994610.1:5648772-5648791
AGCCTCGCGACCCCGCCGACCTCGTCGCGC5648772TCTCCGGCGCCCACACCTTCGGCAAGGCGCACTGCAGCACCTTCGGCTCC
Avena insularis genome assembly, chromosome: 2C.
OU342339.1:420992665-420992684
CACAAGCAACCGGCCGAAGAACCAATCACT420992665TCTCCGGCGCCCACACCTTCCAAACAAACTTCAAGAACTGGTGTTTAAGG
Avena sativa genome assembly, chromosome: 2C.
OU342386.1:444739080-444739099
CACAAGCAACCGGCCGAAGAACCAATCACT444739080TCTCCGGCGCCCACACCTTCCAAACAAACTTCAAGAACTGGTGTTTAAGG
Avena eriantha genome assembly, chromosome: 1C.
OU342740.1:470648438-470648457
GAGGTTGGGATCCACTCCTGCACAAACACT470648438TCTCCGGCGCCCACACCTTCCAAACAAACTTCAAGAACTGGTGTTTAAGG
Avena longiglumis genome assembly, chromosome: 2A.
OU342748.1:501251226-501251245
GCACGAACAACCAGCCAAAGAACCATCACT501251226TCTCCGGCGCCCACACCTTCCAAACAAACTTTGAGAACTGGTGTTTAAGG
Avena sativa genome assembly, chromosome: 9.
OV702287.1:481561912-481561931
CACAAGCAACCGGCCGAAGAACCAATCACT481561912TCTCCGGCGCCCACACCTTCCAAACAAACTTCAAGAACTGGTGTTTAAGG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
OX459999.1:656830848-656830867
GGAGCCTCGACGTCGCCGACCTCGTGTCCC656830848TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460083.1:655670433-655670452
GGAGCCTCGACGTCGCCGACCTCGTGTCCC655670433TCTCCGGCGCCCACACCTTCGGCGTCGCTCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare genome assembly, chromosome: 2H.
OX460216.1:658331560-658331579
GGAGCCTCGACGTCGCCGACCTCGTGTCCC658331560TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare genome assembly, chromosome: 2H.
OX460223.1:657620760-657620779
GGAGCCTCGACGTCGCCGACCTCGTGTCCC657620760TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare genome assembly, chromosome: 2H.
OX460293.1:661681012-661681031
GGAGCCTCGACGTCGCCGACCTCGTGTCCC661681012TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638764.1:656206285-656206304
GGAGCCTCGACGTCGCCGACCTCGTGTCCC656206285TCTCCGGCGCCCACACCTTCGGCGTCGCTCACTGCCCGGCCTTCGAGGAC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638771.1:648978276-648978295
GGAGCCTCGACGTCGCCGACCTCGTGTCCC648978276TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Hordeum bulbosum genome assembly, chromosome: 2H_1.
OY737410.1:583191996-583192015
GCGGCCTCGACGTGGCCGACCTGGTGTCCC583191996TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGACGAC
Hordeum bulbosum genome assembly, chromosome: 2H_3.
OY737475.1:550780073-550780092
GCGGCCTCGACGTGGCCGACCTCGTGTCCC550780073TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGACGAC
Hordeum bulbosum genome assembly, chromosome: 2H_1.
OY737519.1:554255764-554255783
GCGGCCTCGACGTGGCCGACCTCGTGTCCC554255764TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGACGAC
Hordeum bulbosum genome assembly, chromosome: 2H_3.
OY737626.1:547603029-547603048
GCGGCCTCGACGTGGCCGACCTTGTGTCCC547603029TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGACGAC
Hordeum bulbosum genome assembly, chromosome: 2H_4.
OY737633.1:559643094-559643113
GCGGCCTCGACGTGGCCGACCTTGTGTCCC559643094TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGACGAC
Hordeum bulbosum genome assembly, chromosome: 2H_1.
OY737867.1:361247609-361247628
GCGGCCTCGACGTGGCCGACCTGGTGTCCC361247609TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGACGAC
H.vulgare mRNA for peroxidase.
X62438.1:59-78
GGAGCCTCGACGTCGCCGACCTCGTGTCCC59TCTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGAC
Streptomyces genisteinicus strain CRPJ-33 chromosome.
CP060825.1:5240199-5240218
GCGCCGAACCCGGCACCGACTACACCCCGG5240199TCTCCGGCGCCCACACCTTCCCCGCGGGCACCCCTTCCGGCGCCACCCGC
Archangium violaceum strain SDU34 chromosome, complete genome.
CP069338.1:8726954-8726973
ACCGGCTCGCGCCCACCCTGGACGGCCATG8726954TCTCCGGCGCCCACACCTTCGGCCGCTTCAAGCTCTTCGGCGACGCGGAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tctccggcgcccacaccttc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tctccggcgcccacaccttc | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.085 | 1.077 | search_plus_done; http://172.18.8.135:50400/match?q=TCTCCGGCGCCCACACCTTC&k=0&no_gap=0&offset=0&limit=50
1.255 | 0.169 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGGTGTGGGCGCCGGAGA&k=0&no_gap=0&offset=0&limit=0
1.255 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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