GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:01:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:40673359-40673378
TCCTTGGCCTCTTCAACGGTTAGCCCTGCC40673359TGAACCAAGTCCTCCACTCCAACTTCGCCTATTTTCTTCACCATCTCTCT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:580719-580738
AGAGAGATGGTGAAGAAAATAGGCGAAGTT580719GGAGTGGAGGACTTGGTTCAGGCAGGGCTAACCGTTGAAGAGGCCAAGGA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:612875-612894
AGAGAGATGGTGAAGAAAATAGGCGAAGTT612875GGAGTGGAGGACTTGGTTCAGGCAGGGCTAACCGTTGAAGAGGCCAAGGA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:624129-624148
AGAGAGATGGTGAAGAAAATAGGCGAAGTT624129GGAGTGGAGGACTTGGTTCAGGCAGGGCTAACCGTTGAAGAGGCCAAGGA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:690896-690915
AGAGAGATGGTGAAGAAAATAGGCGAAGTT690896GGAGTGGAGGACTTGGTTCAGGCAGGGCTAACCGTTGAAGAGGCCAAGGA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:623201-623220
AGAGAGATGGTGAAGAAAATAGGCGAAGTT623201GGAGTGGAGGACTTGGTTCAGGCAGGGCTAACCGTTGAAGAGGCCAAGGA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:678392-678411
AGAAAGATGGTGAAGAAAATAGGCGAAGTT678392GGAGTGGAGGACTTGGTTCAGGCAGGGCTAACCGTTGAAGAGGCCAAGGA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:668209-668228
AGAGAGATGGTGAAGAAAATAGGCGAAGTT668209GGAGTGGAGGACTTGGTTCAGGCAGGGCTAACCGTTGAAGAGGCCAAGGA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:657867-657886
AGAGAGATGGTGAAGAAAATAGGCGAAGTT657867GGAGTGGAGGACTTGGTTCAGGCAGGGCTAACCGTTGAAGAGGCCAAGGA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:652024-652043
AGAGAGATGGTGAAGAAAATAGGCGAAGTT652024GGAGTGGAGGACTTGGTTCAGGCAGGGCTAACCGTTGAAGAGGCCAAGGA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:692749-692768
AGAGAGATGGTGAAGAAAATAGGCGAAGTT692749GGAGTGGAGGACTTGGTTCAGGCAGGGCTAACCGTTGAAGAGGCCAAGGA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:634177-634196
AGAGAGATGGTGAAGAAAATAGGCGAAGTT634177GGAGTGGAGGACTTGGTTCAGGCAGGGCTAACCGTTGAAGAGGCCAAGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tgaaccaagtcctccactcc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tgaaccaagtcctccactcc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.181 | 0.173 | search_plus_done; http://172.18.8.135:50400/match?q=TGAACCAAGTCCTCCACTCC&k=0&no_gap=0&offset=0&limit=50
0.240 | 0.059 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGTGGAGGACTTGGTTCA&k=0&no_gap=0&offset=0&limit=49
0.247 | 0.007 | cgi_end;

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