GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:40:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus domestica genome assembly, chromosome: 12.
OU696688.1:18041699-18041718
TGTGATGGTGGTGTTTTTAAGCTCGATCTA18041699TGAAGTATGGTGGTGCGTTCAAGAGTTCGAGTGATGAGAGAGAGAGAGAG
Malus domestica genome assembly, chromosome: 12.
OU744553.1:18045760-18045779
TGTGATGGTGGTGTTTTTAAGCTCGATCTA18045760TGAAGTATGGTGGTGCGTTCAAGAGTTCGAGTGATGAGAGAGAGAGAGAG
Malus domestica genome assembly, chromosome: 12.
OU744964.1:17604354-17604373
TGTGATGGTGGTGTTTTTAAGCTCGATCTA17604354TGAAGTATGGTGGTGCGTTCAAGAGTTCGAGTGATGAGAGAGAGAGAGAG
Malus domestica genome assembly, chromosome: 12.
OU745002.1:17769672-17769691
TGTGATGGTGGTGTTTTTAAGCTCGATCTA17769672TGAAGTATGGTGGTGCGTTCAAGAGTTCGAGTGATGAGAGAGAGAGAGAG
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:14020634-14020653
TATCTTCTCTCTCTCCTCACTCGAACTCTT14020634GAACGCACCACCATACTTCATAGACCGAGCTTAAAAACACCACCATCACA
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:13967196-13967215
CTCTCTCTCTCTCTCATCACTCGAACTCTT13967196GAACGCACCACCATACTTCATAGATCGAGCTTAAAAACACCACCATCACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tgaagtatggtggtgcgttc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tgaagtatggtggtgcgttc | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.315 | 0.307 | search_plus_done; http://172.18.8.135:50400/match?q=TGAAGTATGGTGGTGCGTTC&k=0&no_gap=0&offset=0&limit=50
0.371 | 0.056 | search_minus_done; http://172.18.8.135:50400/match?q=GAACGCACCACCATACTTCA&k=0&no_gap=0&offset=0&limit=46
0.372 | 0.001 | cgi_end;

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