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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 09:29:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Anas platyrhynchos genome assembly, chromosome: 4.
LS423614.1:30802-30819
TAAGGAAGGTCTCAGTGGTGGAGGCTGGCT30802TGATCAGACGGATTCAGTCTTGACCAATAAGATTGGTACTGTGCTAGG
Taurulus bubalis genome assembly, chromosome: 18.
OU342728.1:18163853-18163870
CCAAAACATGTATAAGGGGATATACGAGAC18163853TGATCAGACGGATTCAGTCCGTGCATCGCTGGTGAGGAATGAGTAGCA
Somateria mollissima genome assembly, chromosome: 4.
OX598693.1:77163054-77163071
TAAGGAAGGTCTCAGTGGTGGAGGCTGGCT77163054TGATCAGACGGATTCAGTCTTGACCAATAAGATTGGTACTGTGCTAGG
Carassius carassius genome assembly, chromosome: 29.
OY720496.1:2253313-2253330
AAATCCGAAATTAAACCCAAGTACACTTAC2253313TGATCAGACGGATTCAGTTGTGTTTTTAAACAGTTCTTTACAAGAAAC
Blennius ocellaris genome assembly, chromosome: 14.
OY730214.1:15016566-15016583
AATTCCCTGAGATTTGTACGTCCTTGTATG15016566TGATCAGACGGATTCAGTCGTGTGCTACAATGACATCAGTTCCTGATA
Anas acuta genome assembly, chromosome: 4.
OZ009966.1:76335148-76335165
TAAGGAAGGTCTCAGTGGTGGAGGCTGGCT76335148TGATCAGACGGATTCAGTCTTGACCAATAAGATTGGTACTGTGCTAGG
BOGAO26TF BOGA Brassica oleracea genomic clone BOGAO26, genomic survey sequence.
BH249838.1:87-104
CGCGGAGGGGAAGCAGGGAGGCAAAGGAAA87TGATCAGACGGATTCAGTTTTATCAGAATCAAGAGAAAGTGAGGAGAG
BoTo91K18/F BOTO1 Brassica oleracea genomic, genomic survey sequence.
FI569234.1:124-141
CGCGGAGGGGAAGCAGGGAGGCAAAGGAAA124TGATCAGACGGATTCAGTTTTATCAGAATCAAGAGAAAGTGAGGAGAG
BOT01-91K18TF BOT01 Brassica oleracea genomic clone BOT01-91K18, genomic survey sequence.
FI742965.1:79-96
CGCGGAGGGGAAGCAGGGAGGCAAAGGAAA79TGATCAGACGGATTCAGTTTTATCAGAATCAAGAGAAAGTGAGGAGAG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:967187-967204
CGCGGAGGGGAAGCAGGGAGGCAAAGGAAA967187TGATCAGACGGATTCAGTTTTATCAGAATCAAGAGAAAGTGAGGAGAC
Grimontia hollisae strain FDAARGOS_111 chromosome 1, complete sequence.
CP014056.2:360366-360383
AAGGATGCCCAGAAGTTGCGCACCAATACC360366TGATCAGACGGATTCAGTTCATTGGCATTGCTTTTCAGGCTTTCATCA
Grimontia hollisae strain 2013V-1029 chromosome 1, complete sequence.
CP035690.1:1787059-1787076
AAGGATGCCCAGAAGTTGCGCACCAATACC1787059TGATCAGACGGATTCAGTTCATTGGCATTGCTTTTCAGGCTTTCATCA
Grimontia hollisae strain 1078-81 chromosome 1, complete sequence.
CP046810.1:1847791-1847808
AAGGATGCCCAGAAGTTGCGCACCAATACC1847791TGATCAGACGGATTCAGTTCATTGGCATTGCTTTTCAGGCTTTCATCA
Nycteola revayana genome assembly, chromosome: 11.
OX344849.2:11633317-11633334
TGATAATTTCTAATGCGGTAATTGTAAAGC11633317TGATCAGACGGATTCAGTATTTATCCTTATCATTTTAAATGAGTTAAT
Troglohyphantes excavatus genome assembly, chromosome: 4.
OZ010669.1:71625086-71625103
TGTGACGATATGGTTTCAAGAAGAGTCTAC71625086TGATCAGACGGATTCAGTATGGTCAAAACGCTTGTTCACGAAACAGAT
Somateria mollissima genome assembly, chromosome: 4.
OX598306.1:652714-652731
CCTAGCACAGTACCAATCTTATTGGTCAAG652714ACTGAATCCGTCTGATCAAGCCAGCCTCCACCACTGAGACCTTCCTTA
TSA: Hynobius retardatus mRNA, contig: comp185094_c3_seq1.
LE155495.1:5882-5899
CCTAGCACAGTGCCAATCTTATTGGTTAGG5882ACTGAATCCGTCTGATCAAGCCAGCCGCCACCGCTCAGCCCTTCTTTA
TSA: Hynobius retardatus mRNA, contig: comp185094_c3_seq2.
LE155496.1:5882-5899
CCTAGCACAGTGCCAATCTTATTGGTTAGG5882ACTGAATCCGTCTGATCAAGCCAGCCGCCACCGCTCAGCCCTTCTTTA
BOT01-112O12TF BOT01 Brassica oleracea genomic clone BOT01-112O12, genomic survey sequence.
FI761284.1:591-608
CTCTCCTCACTTTCTCTTGATTCTGATAAA591ACTGAATCCGTCTGATCATTTCCTTTGCCTCCCTGCTTCCCCTCCGCG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:40714305-40714322
GTCTCCTCACTTTCTCTTGATTCTGATAAA40714305ACTGAATCCGTCTGATCATTTCCTTTGCCTCCCTGCTTCCCCTCCGCG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:49992252-49992269
CTCTCCTCACTTTCTCTTGATTCTGATAAA49992252ACTGAATCCGTCTGATCATTTCCTTTGCCTCCCTGCTTCCCCTCCGCG
Grimontia hollisae strain F9489 chromosome 1, complete sequence.
CP046851.1:62031-62048
TGATGAAAGCCTGAAAAGCAATGCCAATGA62031ACTGAATCCGTCTGATCAGGTATTGGTGCGCAACTTCTGGGCATCCTT
Alitta virens genome assembly, chromosome: 5.
OW028577.1:32782481-32782498
CTTTTTGTACACCTCGCTTAGTTACCATTG32782481ACTGAATCCGTCTGATCACCAATTACTGTAATTAACATGCAGCTTCTG
Hipparchia semele genome assembly, chromosome: 24.
OW121732.1:6697790-6697807
CAGATTAGGTAAGTGCAACCTAGAATCAGT6697790ACTGAATCCGTCTGATCAGGTCGGATTCGGTCAGGTTGGGTCCGATTT
Nycteola revayana genome assembly, chromosome: 7.
OX344845.2:8268989-8269006
ATATTAACATTTAAAATGATAAGGATAAAT8268989ACTGAATCCGTCTGATCAGCTTTACAATTACCGCATTAGAAATGATCA
Azorinus chamasolen genome assembly, chromosome: 9.
OY755243.1:67381669-67381686
AACTGAGTAGACCCAGATCAGATGGCTCCT67381669ACTGAATCCGTCTGATCAGTGTCTGTTCTGTTTGCTTATGGAATAGTA
Cordilura impudica genome assembly, chromosome: 5.
OY821521.1:125807870-125807887
TTCTCGAGATCTTCAAGCTTTGTCTCTAGT125807870ACTGAATCCGTCTGATCATGTATGTCAGATTTTTCGAAATTTGTGCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tgatcagacggattcagt
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tgatcagacggattcagt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.379 | 0.370 | search_plus_done; http://172.18.8.135:50400/match?q=TGATCAGACGGATTCAGT&k=0&no_gap=0&offset=0&limit=50
0.565 | 0.186 | search_minus_done; http://172.18.8.135:50400/match?q=ACTGAATCCGTCTGATCA&k=0&no_gap=0&offset=0&limit=35
0.573 | 0.008 | cgi_end;

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