GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:54:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Ipomoea nil cDNA clone:jmsf22l09, 5' end.
CJ741832.1:171-194
GATTTTCTTGATTTTAGCAAGAATGGGTGT171TGATGATTCTTGAAGGGGAGCACTGGGTTTTCCAGATTTAATTCAGTTTGAGGG
Ipomoea nil mRNA, clone: jm43e14, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY923801.1:4-27
GGT4TGATGATTCTTGAAGGGGAGCACTGGGGTTTTCCAGATTTAATTCAGTTTGAGG
Ipomoea nil mRNA, clone: jm50b07, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY926288.1:4-27
GGT4TGATGATTCTTGAAGGGGAGCACTGGGTTTTCCAGATTTAATTCAGTTTGAGGG
Ipomoea nil mRNA, clone: JMFS121E09, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY945318.1:161-184
GATTTTCTTGATTTTAGCAAGAATGGGTGT161TGATGATTCTTGAAGGGGAGCACTGGGTTTTCCAGATTTAATTCAGTTTGAGGG
Ipomoea trifida cultivar NCNSP0306 chromosome 2.
CP025645.1:6689857-6689880
CCCTCAAACTGAATTAAATCTGGAAAACCC6689857AGTGCTCCCCTTCAAGAATCATCAACACCCATTCTTGCTAAAATCAAGAAAATC
Ipomoea triloba cultivar NCNSP0323 chromosome 2.
CP025661.1:852852-852875
CCCTCAAACTGAATTAAATCTGGAAAACCC852852AGTGCTCCCCTTCAAGAATCATCAACACCCATTCTTGCTAAAATCAAGAAAATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tgatgattcttgaaggggagcact
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tgatgattcttgaaggggagcact | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.439 | 0.430 | search_plus_done; http://172.18.8.135:50400/match?q=TGATGATTCTTGAAGGGGAGCACT&k=0&no_gap=0&offset=0&limit=50
0.525 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=AGTGCTCCCCTTCAAGAATCATCA&k=0&no_gap=0&offset=0&limit=46
0.527 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).