GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 01:01:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 4.
OU383777.1:5322420-5322439
AATCCGACACTCTTTTTCCTCAGTTTCAAT5322420TGCCCTGAAACCAAAAATGTAGGAAAAAATATTCAAAATATACAAAATCA
Phocoena phocoena genome assembly, chromosome: 9.
OZ004766.1:91750116-91750135
CCAAGAAAAGTAAGTGCAGCCCACAAAGGC91750116ACATTTTTGGTTTCAGGGCATTTGCCAGTTTAGTAGCAATAGCTTCAGTA
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 5.
CP125977.1:266431364-266431383
ATCGACTGGGAAACTTTTGTGTGTGGCAAA266431364ACATTTTTGGTTTCAGGGCAACTTTGGTGTCGACGAAGTAATTAGTGTAT
Asterias amurensis isolate Qingdao Taiping Cape Park chromosome 18.
CP134969.1:14301935-14301954
TATTGTGGCAGAGTGACTTACACTGTTCAT14301935ACATTTTTGGTTTCAGGGCAACACTGTAATAATTCTGAGTATTCAATCTC
Limnoperna fortunei genome assembly, chromosome: 1.
OX104111.1:88735443-88735462
TACATGTTTCAGAGATCATCTATACCTTGA88735443ACATTTTTGGTTTCAGGGCAGATCTATTATATGTAGGCTGTGTGTTGTAC
Eupithecia vulgata genome assembly, chromosome: 13.
OX297872.1:9605306-9605325
CACAAGATTGCACACTTTTTAGACATAGAC9605306ACATTTTTGGTTTCAGGGCATAATCGAACCTTTATTGTATAAAGAAAGTG
Microdon myrmicae genome assembly, chromosome: 1.
OZ007496.1:3316509-3316528
GAATTGCTTAAAGTTCTGAATGCTAGTTTG3316509ACATTTTTGGTTTCAGGGCATTTCTTGGTTTAATATCTTTTTGGAGGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tgccctgaaaccaaaaatgt
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tgccctgaaaccaaaaatgt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.097 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=TGCCCTGAAACCAAAAATGT&k=0&no_gap=0&offset=0&limit=50
0.114 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=ACATTTTTGGTTTCAGGGCA&k=0&no_gap=0&offset=0&limit=49
0.118 | 0.004 | cgi_end;

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