GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:54:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Ipomoea batatas Contig_6490.Ipbalsr mRNA sequence.
JP111078.1:1021-1044
TCTCTTGGAGATCAAGGTCAATAATGATGA1021TGCCGAGGAATGAAAAGAGGAATAGCTTTTGCTATCTATCCTCATATTCTTCTT
Ipomoea trifida cultivar NCNSP0306 chromosome 6.
CP025649.1:9713931-9713954
TCTCTTGGAGATCAAGGTCAATAATGATGA9713931TGCCGAGGAATGAAAAGAGGAATAGCTTTCGCTATCTATCCTCATATTCTTCTT
Ipomoea triloba cultivar NCNSP0323 chromosome 6.
CP025665.1:7514763-7514786
TCTCTTGGAGATCAAGGTCAATAATGATGA7514763TGCCGAGGAATGAAAAGAGGAATAGCTTTCGCTATCTATCCTCATATTCTTCTT
Ipomoea nil cDNA clone:jm1h17, 3' end, single read.
BJ568143.1:187-210
AAGAATATGAGGATAATANATAGCGGAANC187TATTCCTCTTTTCATTCCTCGGCATCATCATTATTGACCTTGATCTCCAAGAGA
Ipomoea nil cDNA clone:jm17e18, 3' end, single read.
BJ571321.1:179-202
AAGAATATGAGGATAATANATAGCGGAAGC179TATTCCTCTTTTCATTCCTCGGCATCATCNTTATTGACCTTGATCTCCAAGAGA
Ipomoea nil cDNA clone:jm23k16, 3' end, single read.
BJ573378.1:175-198
AAGAATATGAGGATAATANATAGCGGAAGC175TATTCCTCTTTTCATTCCTCGGCATCATCATTATTGACCTTGATCTCCAAGAGA
Ipomoea nil cDNA clone:jmsf1i04, 3' end.
CJ759211.1:179-202
AAGAATATGAGGATAATAGATAGCGGAAGC179TATTCCTCTTTTCATTCCTCGGCATCATCATTATTGACCTTGATCTCCAAGAGA
Ipomoea nil cDNA clone:jmsf8g18, 3' end.
CJ769205.1:166-189
AAGAATATGAGGATAATAGATAGCGGAAGC166TATTCCTCTTTTCATTCCTCGGCATCATCATTATTGACCTTGATCTCCAAGAGA
Ipomoea nil mRNA, clone: jm45e08, 3' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY920429.1:234-257
AAAAATATGAGGATAATAGATAGCGGAAGC234TATTCCTCTTTTCATTCCTCGGCATCATCATTATTGACCTTGATCTCCAAGAGA
Ipomoea nil DNA, BAC clone: JMHiBa-028O15, sequence: JMHiBa-028O15.b.
GA939461.1:317-340
AAGAATATGAGGATAATAGATAGCGGAAGC317TATTCCTCTTTTCATTCCTCGGCATCATCATTATTGACCTTGATCTCCAAGAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tgccgaggaatgaaaagaggaata
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tgccgaggaatgaaaagaggaata | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.186 | 0.177 | search_plus_done; http://172.18.8.135:50400/match?q=TGCCGAGGAATGAAAAGAGGAATA&k=0&no_gap=0&offset=0&limit=50
0.494 | 0.307 | search_minus_done; http://172.18.8.135:50400/match?q=TATTCCTCTTTTCATTCCTCGGCA&k=0&no_gap=0&offset=0&limit=47
0.498 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).