GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:39:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea trifida cultivar NCNSP0306 chromosome 7.
CP025650.1:13750159-13750182
GTTGCAAGGTTTTGAAGAAGAGTCCTCAGC13750159TGCTGTAGATCATCAGGAAGCACCCGAGGAGTGGGTCAATGGATCTCAAACTCC
Ipomoea trifida cultivar NCNSP0306 chromosome 13.
CP025656.1:1130846-1130869
GTTGCAAGGTTTTGAAGAAGAGTCCTCATC1130846TGCTGTAGATCATCAGGAAGCACCCGAGGAGTGGGTCGCTGGATCTCAAACTCC
Ipomoea triloba cultivar NCNSP0323 chromosome 13.
CP025672.1:1879923-1879946
GTTGCAAGGTTTTGAAGAAGAGTCCTCATC1879923TGCTGTAGATCATCAGGAAGCACCCGAGGAGTGGGTCGCTGGATCTCAAACTCC
Ipomoea nil cDNA clone:jmsf22d21, 5' end.
CJ741663.1:156-179
GGAGTTTGAGATCCAGCNACCCACTCCTCG156GGTGCTTCCTGATGATCTACAGCAGATGAGGACTCTTCTTCAAAACCTTGCNNT
Ipomoea nil cDNA clone:jmsf29c01, 5' end.
CJ744157.1:158-181
GGAGTTTGAGATCCNGCNACCCNCTCCTCG158GGTGCTTCCTGATGATCTACAGCANATGANGACTCTTCTTCAAAACCTTGCNNT
Ipomoea nil mRNA, clone: jm50i05, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY926452.1:155-178
GGAGTTTGAGATCCAGCGACCCACTCCTCG155GGTGCTTCCTGATGATCTACAGCAGATGAGGACTCTTCTTCAAAACCTTGCAAT
Ipomoea nil mRNA, clone: jm50k05, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY926492.1:152-175
GGAGTTTGAGATCCAGCGACCCACTCCTCG152GGTGCTTCCTGATGATCTACAGCACATGAGGACTCTTCTTCAAAACCTTGCAAT
Ipomoea nil mRNA, clone: JMFS014D10, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY936945.1:74-97
GGAGTTTGAGATCCAGCGACCCACTCCTCG74GGTGCTTCCTGATGATCTACAGCAGATGAGGACTCTTCTTCAAAACCTTGCAAT
Ipomoea nil mRNA, clone: JMFS077H10, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY942015.1:74-97
GGAGTTTGAGATCCAGCGACCCACTCCTCG74GGTGCTTCCTGATGATCTACAGCAGATGAGGACTCTTCTTCAAAACCTTGCAAT
Ipomoea nil mRNA, clone: JMFS097C04, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY943407.1:74-97
GGAGTTTGAGATCCAGCGACCCACTCCTCG74GGTGCTTCCTGATGATCTACAGCAGATGAGGACTCTTCTTCAAAACCTTGCAAT
Ipomoea nil mRNA, clone: JMFS101D11, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY943777.1:74-97
GGAGTTTGAGATCCAGCGACCCACTCCTCG74GGTGCTTCCTGATGATCTACAGCAGATGAGGACTCTTCTTCAAAACCTTGCAAT
Ipomoea nil mRNA, clone: JMFS139C03, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY946681.1:74-97
GGAGTTTGAGATCCAGCGACCCACTCCTCG74GGTGCTTCCTGATGATCTACAGCAGATGAGGACTCTTCTTCAAAACCTTGCAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tgctgtagatcatcaggaagcacc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tgctgtagatcatcaggaagcacc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=TGCTGTAGATCATCAGGAAGCACC&k=0&no_gap=0&offset=0&limit=50
1.232 | 1.120 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGCTTCCTGATGATCTACAGCA&k=0&no_gap=0&offset=0&limit=47
1.238 | 0.006 | cgi_end;

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