GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 16:40:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil cDNA clone:jm11f10, 5' end, single read.
BJ553529.1:199-222
TATTGCTAGGCAATTTAGTTCAAAAGCCAG199TGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCATAGCTCTGA
Ipomoea nil cDNA clone:jm20j03, 5' end, single read.
BJ556849.1:200-223
TATTGCTAGGCAATTTAGTTCAAAAGCCAG200TGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCATAGCTCTGA
Ipomoea nil cDNA clone:jmsf27m01, 5' end.
CJ743664.1:287-310
GTTTTCATATTGATGCAGTTCAAAAGCCAG287TGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCATAGCTCTGA
BRS2050 storage root cDNA library Ipomoea batatas cDNA, mRNA sequence.
DV036559.1:241-264
TATTGCTAGGCAATTTAGTTCAAAAGCCAG241TGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCATAGCTCTGA
Ipomoea batatas mRNA, clone: IbKAES06K12, unspecified EST, cultivar: Koukei 14.
HX982731.1:208-231
TATTGCTAGGCAATTTAGTTCAAAAGCCAG208TGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCATAGCTCTGA
Ipomoea batatas mRNA, clone: IbKAES09J14, unspecified EST, cultivar: Koukei 14.
HX983858.1:176-199
TATTGCTAGGCAATTTAGTTCAAAAGCCAG176TGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCATAGCTCTGA
Ipomoea batatas mRNA, clone: IbKAES09M21, unspecified EST, cultivar: Koukei 14.
HX983937.1:205-228
TATTGCTAGGCAATTTAGTTCAAAAGCCAG205TGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCATAGCTCTGA
Ipomoea nil mRNA, clone: JMFN003E04, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY927204.1:183-206
TATTGCTAGGCAATTTAGTTCAAAAGCCAG183TGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCATAGCTCTGA
Ipomoea nil mRNA, clone: JMFN006D22, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY927950.1:241-264
TATTGCTAGGCAATTTAGTTCAAAAGCCAG241TGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCATAGCTCTGA
Ipomoea nil mRNA, clone: JMFN041J15, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY934979.1:178-201
TATTGCTAGGCAATTTAGTTCAAAAGCCAG178TGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCATAGCTCTGA
TSA: Ipomoea batatas Contig_5787.Ipbalsr mRNA sequence.
JP110375.1:917-940
TCAGAGCTATGGGAGTTCACAGTACTCAAG917TCAATACCAGCAGCTTCATTTCCACTGGCTTTTGAACTAAATTGCCTAGCAATA
Ipomoea trifida cultivar NCNSP0306 chromosome 1.
CP025644.1:811443-811466
ACAGAGCTATGGGAGTTCACAGTACTCAAG811443TCAATACCAGCAGCTTCATTTCCACTGGCTTTTGAACTGCATCAATATGAAAAC
Ipomoea triloba cultivar NCNSP0323 chromosome 1.
CP025660.1:830349-830372
TCAGAGCTATGGGAGTTCACAGTACTCAAG830349TCAATACCAGCAGCTTCATTTCCACTGGCTTTTGAACTGCATCAATATGAAAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tggaaatgaagctgctggtattga
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tggaaatgaagctgctggtattga | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.656 | 0.647 | search_plus_done; http://172.18.8.135:50400/match?q=TGGAAATGAAGCTGCTGGTATTGA&k=0&no_gap=0&offset=0&limit=50
0.692 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=TCAATACCAGCAGCTTCATTTCCA&k=0&no_gap=0&offset=0&limit=40
0.694 | 0.002 | cgi_end;

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