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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-01-04 07:59:02, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

OL6004F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6004, mRNA sequence.
EH423427.1:321-338
AGTGAAACAAGTCGATAAGAAACCTCATTG321TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
0189365 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV092264.1:314-331
AGTGAAACACGTCGATAAGAAATCTCATTG314TGTCCAAGTCAGATTCGGGTAGGTCAAGCTCTTCAGGCAGTTTATTGG
0189366 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV092265.1:314-331
AGTGAAACACGTCGATAAGAAATCTCATTG314TGTCCAAGTCAGATTCGGGTAGGTCAAGCTCTTCAGGCAGTTTATTGG
0106363 Brassica napus Damaged cotyledons Brassica napus cDNA, mRNA sequence.
EV224437.1:366-383
GGCGAAACACGTCAATAAGAAACCTCATTG366TGTCCAAGTCAGATTCGGTTAAGTCATACTCTTCCCGCAGTTTATTGG
0246084 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO956181.1:354-371
AGTGAAACACGTCGATAAGAAATCTCATTG354TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1095.
FX692061.1:421-438
GGCGAAACACGTCGATAAGAAACCTCATTG421TGTCCAAGTCAGATTCGGCTAAGTCATACTCTTCACGCAGCTTTTTGG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_11107.
FX692407.1:243-260
AGTGAAACACGTCGATAAGAAATCTCATTG243TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6156.
FX726501.1:149-166
AGTGAAACACGTCGATAAGAAATCTCATTG149TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_39674.
FX731128.1:95-112
GGCGAAACACGTCGATAAGAAACCTCATTG95TGTCCAAGTCAGATTCGGCTAAGTCATACTCTTCACGCAGCGTTTTGG
TSA: Raphanus sativus RS02204 mRNA sequence.
JT786751.1:61-78
GGCGAAACACGTCGATGAGAAACCTCATCG61TGTCCAAGTCAGATTCGGTTAAGTCATACTCTTCACGCAGTTTATTGG
TSA: Raphanus sativus RS02207 mRNA sequence.
JT786754.1:61-78
GGCGAAACACGTCGATGAGAAACCTCATCG61TGTCCAAGTCAGATTCGGTTAAGTCATACTCTTCACGCAGTTTATTGG
Brassica rapa subsp. pekinensis GSS, clone KBrH061D17, end read, primer SP6.
AJ860491.1:790-807
AGTGAAACACGTCGATTAGAAATCTCATTG790TGTCCAAGTCAGATTCGGTTTAGTCCAGCTCTTCCCGCAGTTTATTGG
KBrH018M11F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH018M11, genomic survey sequence.
DX890886.1:563-580
AGTGAAACACGTCGATAAGAAATCTCATTG563TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
BOT01-40J10TF BOT01 Brassica oleracea genomic clone BOT01-40J10, genomic survey sequence.
FI704668.1:603-620
AGTGAAACAAGTCGATAAGAAACCTCATTG603TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
BOT01-111B13TF BOT01 Brassica oleracea genomic clone BOT01-111B13, genomic survey sequence.
FI753192.1:189-206
GGCGAAACACGTCAATAAGAAACCTCACTG189TGTCCAAGTCAGATTCGGTTAAGTCATACTCTTCCCGCAGTTTATTGG
Raphanus sativus DNA, clone: RSDH17I17_RP-2.
GA881268.1:147-164
GGCGAAACACGTCGATGAGAAACCTCATCG147TGTCCAAGTCAGATTCGGTTAAGTCATACTCTTCACGCAGTTTATTGG
Raphanus sativus DNA, clone: RSDH17I18_RP-2.
GA881270.1:148-165
GGCGAAACACGTCGATGAGAAACCTCATCG148TGTCCAAGTCAGATTCGGTTAAGTCATACTCTTCACGCAGTTTATTGG
Raphanus sativus DNA, clone: RSDH50B06_FP-1.
GA898795.1:310-327
GGCGAAACACGTCGATGAGAAACCTCATCG310TGTCCAAGTCAGATTCGGTTAAGTCATACTCTTCACGCAGTTTATTGG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:68818820-68818837
AGTGAAACACGTCGATAAGAAATCTCATTG68818820TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCAGGCAGTTTATTGG
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:25406543-25406560
GGCGAAACACGTCGATAAGAAACCTCATTG25406543TGTCCAAGTCAGATTCGGCTAAGTCATACTCTTCACGCAGCTTTTTGG
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:58062389-58062406
GGCGAAACACGTCAATAAGAAACCTCATTG58062389TGTCCAAGTCAGATTCGGTTAAGTCATACTCTTCCCGCAGTTTATTGG
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:15585529-15585546
TATTGATTCCATAAATCTCCTGTCTTCGAG15585529TGTCCAAGTCAGATTCGGTGTTGAGCCCATCTTTTACAGATGTGGAGA
Camelina sativa cultivar Joelle chromosome 3.
CP145267.1:615251-615268
GGTGAAACACGTCGATAAGAAATCTCAATG615251TGTCCAAGTCAGATTCGGTTAGGTCAAACTCTTCACAGAGTTTGTTAG
Brachypodium hybridum ecotype IBd483 chromosome BhD1 sequence.
CP145498.1:21039547-21039564
GTCTGGTCATCTGTGTTTGACACTTTGACC21039547TGTCCAAGTCAGATTCGGCCGAGCATGCATGTTGCAGGTGGGAAGAAT
Brachypodium hybridum ecotype IBd483 chromosome BhS6 sequence.
CP145508.1:6547538-6547555
TCTTTAGAGTCAGGTCATCGGTGTTTGACC6547538TGTCCAAGTCAGATTCGGCCGATCGAGCTTGTCGCAATTGTCATACAA
Brachypodium stacei ecotype Bst99 chromosome 6 genomic sequence.
CP145523.1:6622504-6622521
TCTTTAGAGTCAGGTCATCGGTGTTTGACC6622504TGTCCAAGTCAGATTCGGCCGATCGAGCTTGTCGCAATTGTCATACAA
Brachypodium distachyon ecotype Bd21 chromosome 1 genomic sequence.
CP145528.1:20810408-20810425
GTCTGGTCATCTGTGTTTGACACTTTGACC20810408TGTCCAAGTCAGATTCGGCCGAGCATGCATGTTGCAGGTGGGAAGAAT
Brassica napus cultivar Xiang5A chromosome 9.
CP151904.1:68435305-68435322
AGTGAAACACGTCGATAAGAAATCTCATTG68435305TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCAGGCAGTTTATTGG
Brassica napus cultivar Xiang5A chromosome 18.
CP151913.1:53847848-53847865
AGTGAAACAAGTCGATAAGAAACCTCATTG53847848TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:52763679-52763696
AGTGAAACACGTCGATAAGAAATCTCATTG52763679TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCAGGCAGTTTATTGG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:40813877-40813894
AGTGAAACAAGTCGATAAGAAACCTCATTG40813877TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
Brassica rapa genome, scaffold: A09.
LR031568.1:56860627-56860644
AGTGAAACACGTCGATAAGAAATCTCATTG56860627TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50090307-50090324
AGTGAAACAAGTCGATAAGAAACCTCATTG50090307TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:18515095-18515112
AGTGAAACACGTCGATAAGAAATCTCATTG18515095TGTCCAAGTCAGATTCGGGTAAGTCATACTCTTCACGTAGTTTAGTGG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67384652-67384669
AGTGAAACACGTCGATAAGAAATCTCATTG67384652TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
Thuidium tamariscinum genome assembly, chromosome: 7.
OX344755.2:1961197-1961214
TGGTTCTTTGCGAGGAAAAAAGATACCATA1961197TGTCCAAGTCAGATTCGGCAACTTACTGCTGAAATATTTTAATTTTAG
Chionographis japonica genome assembly, chromosome: 7.
OX393555.1:39931136-39931153
ACCCGTCAAATGTAAGAATTCTTTGGATTA39931136TGTCCAAGTCAGATTCGGGTTATGTCTGTGTTTGTTTTGGGTTAAGTC
Iris foetidissima genome assembly, chromosome: 12.
OZ123572.1:153553415-153553432
GTTACCTTAGGGCCGTGAATCGATACTTTG153553415TGTCCAAGTCAGATTCGGGTACCGACATACGTTAGCGGAGTCGAGTAT
Eudasyphora cyanicolor genome assembly, chromosome: 3.
OZ005736.1:288387187-288387204
ACGCTGCTGATATTACAATATCTGAAGGTC288387187TGTCCAAGTCAGATTCGGCTGAAATATTACGAATAATTTCGGAACGAA
Zygaena sarpedon genome assembly, chromosome: 13.
OZ202032.1:1782077-1782094
TTTACCTTTATCTCTGGCTACGTACTGGCC1782077TGTCCAAGTCAGATTCGGACTCAGTATCTATAAATAGGATTGTAGGGC
Brassica oleracea var. viridis mRNA, clone: KALE-005K01, 3' end sequence.
DK517340.1:410-427
CCAATAAACTGCGGGAAGAGTATGACTTAA410CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Brassica oleracea var. viridis mRNA, clone: KALE-017P17, 3' end sequence.
DK522035.1:371-388
CCAATAAACTGCGGGAAGAGTATGACTTAA371CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Brassica oleracea var. viridis mRNA, clone: KALE-018G07, 3' end sequence.
DK522193.1:401-418
CCAATAAACTGCGGGAAGAGTATGACTTAA401CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Brassica oleracea var. viridis mRNA, clone: KALE-039H24, 3' end sequence.
DK530264.1:355-372
CCAATAAACTGCGTGAAGAGCTTGACCTAA355CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACTTGTTTCACT
Brassica oleracea var. viridis mRNA, clone: KALE-043M20, 3' end sequence.
DK531901.1:388-405
CCAATAAACTGCGGGAAGAGTATGACTTAA388CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Brassica oleracea var. viridis mRNA, clone: KALE-072I01, 3' end sequence.
DK542863.1:396-413
CCAATAAACTGCGTGAAGAGCTTGACCTAA396CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACTTGTTTCACT
Brassica oleracea var. viridis mRNA, clone: KALE-084D13, 3' end sequence.
DK547339.1:414-431
CCAATAAACTGCGGGAAGAGTATGACTTAA414CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Brassica oleracea var. viridis mRNA, clone: KALE-138O22, 3' end sequence.
DK568239.1:359-376
CCAATAAACTGCGGGAAGAGTATGACTTAA359CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
47RDOAH_UP_047_C01_19AUG2004_011 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY029929.1:572-589
CCAATAAACTGCGTGAAGAGCTTGACCTAA572CCGAATCTGACTTGGACACAAT
EX2PLCL3_UP_041_D01_02NOV2004_009 Brassica napus EX2PLCL3 Brassica napus cDNA 5', mRNA sequence.
EE504229.1:267-284
CCAATAAACTGCGGGAAGAGTATGACTTAA267CCGAATCTGACTTGGACACAATAAGGTTTCTTATTGACGTGTTTCGCC
BOGQG67TR BOGQ Brassica oleracea genomic clone BOGQG67, genomic survey sequence.
BH463883.1:209-226
CCAATAAACTGCGGGAAGAGTATGACTTAA209CCGAATCTGACTTGGACACAGTGAGGTTTCTTATTGACGTGTTTCGCC
Brassica napus GSS, clone JBnB062I04, end read, primer SACR2(reverse).
CU950498.1:181-198
CCAATAAACTGCGTGAAGAGCTTGACCTAA181CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACTTGTTTCACT
BOT01-112O12TR BOT01 Brassica oleracea genomic clone BOT01-112O12, genomic survey sequence.
FI761377.1:635-652
CCAATAAACTGCGTGAAGAGCTTGACCTAA635CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACTTGTTTCACT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043F18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189351.2:39771-39788
CCAATAAACTGCGTGAAGAGCTTGACCTAA39771CCGAATCTGACTTGGACACAATGAGATTTCTTATCGACGTGTTTCACT
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:2180930-2180947
CCAATAAACTGCGTGAAGAGCTTGACCTAA2180930CCGAATCTGACTTGGACACAATGAGATTTCTTATCGACGTGTTTCACT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.
AC232437.1:3236-3253
CCAATAAACTGCGTGAAGAGCTTGACCTAA3236CCGAATCTGACTTGGACACAATGAGATTTCTTATCGACGTGTTTCACT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:868678-868695
CCAATAAACTGCGTGAAGAGCTTGACCTAA868678CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACTTGTTTCACT
Camelina sativa cultivar CO46 chromosome 3.
CP131552.1:1429854-1429871
CTAACAAACTCTGTGAAGAGTTTGACCTAA1429854CCGAATCTGACTTGGACACATTGAGATTTCTTATCGACGTGTTTCACC
Camelina sativa cultivar Joelle chromosome 3.
CP145267.1:2068827-2068844
CTAACAAACTCTGTGAAGAGTTTGACCTAA2068827CCGAATCTGACTTGGACACATTGAGATTTCTTATCGACGTGTTTCACC
Camelina sativa cultivar CO46 chromosome 3.
CP146038.1:1464850-1464867
CTAACAAACTCTGTGAAGAGTTTGACCTAA1464850CCGAATCTGACTTGGACACATTGAGATTTCTTATCGACGTGTTTCACC
Brassica napus cultivar Xiang5A chromosome 10.
CP151905.1:1308349-1308366
CCAAAAAGCTGCGTGAAGAGTATGACTTAG1308349CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACGTGTTTCGCC
Brassica napus cultivar Xiang5A chromosome 15.
CP151910.1:1299261-1299278
CCAATAAACTGCGGGAAGAGTATGACTTAA1299261CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Annulohypoxylon stygium strain TJAS01 chromosome 3.
CP157830.1:2088785-2088802
AGACGGAAGCCGCGATCCTGGGCGGGGTCT2088785CCGAATCTGACTTGGACACCTCTGCCGGGCTCGAGGCTGTAGGGAAAA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:1335573-1335590
CCAAAAAGCTGCGTGAAGAGTATGACTTAG1335573CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACGTGTTTCGCC
Brassica napus genome assembly, chromosome: C05.
HG994369.1:1221557-1221574
CCAATAAACTGCGGGAAGAGTATGACTTAA1221557CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Brassica rapa genome, scaffold: A10.
LR031577.1:1378794-1378811
CCAAAACGCTGCGTGAAGAGTATGACTTAG1378794CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACGTGTTTCGCC
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:1191136-1191153
CCAATAAACTGCGGGAAGAGTATGACTTAA1191136CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:29063579-29063596
CCAATAAACTGCGTGAAGAGTATGACTTAA29063579CCGAATCTGACTTGGACACGATGAGGTTTCTCATCGACGTGTTTCGCC
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:1376415-1376432
CCAAAACGCTGCGTGAAGAGTATGACTTAG1376415CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACGTGTTTCGCC
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:1051130-1051147
CCAATAAACTGCGTGAAGAGTATGACTTAA1051130CCGAATCTGACTTGGACACGATGAGGTTTCTCATCGACGTGTTTCGCC
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:25517857-25517874
CCACTAAACTACGTGAAGAGTATGACTTAC25517857CCGAATCTGACTTGGACACAATGAGATTTCTTATCGACGTGTTTCACT
Lepidium didymum genome assembly, chromosome: 3.
OY986993.1:1108223-1108240
CGAACAAACTGTGTGAAGAGTTTGACCTAA1108223CCGAATCTGACTTGGACACAATGAGATTTCTTATCGAGGTGTTTCACC
Hypericum pulchrum genome assembly, chromosome: 1.
OZ066710.1:34473642-34473659
TAACTCGAACACACAATACACTTCAAAAAT34473642CCGAATCTGACTTGGACAGAACCCACACACAATAATCCGAATCTAAAT
Luidia sarsii genome assembly, chromosome: 17.
OX465117.1:14888962-14888979
ACATCCTCCCAAGGGTCGGAGACTCTGACT14888962CCGAATCTGACTTGGACAGTTTATTTTGAGCCTTTGAAATGAGTTACT
Clathrolucina costata genome assembly, chromosome: 10.
OZ218128.1:72478586-72478603
AGCAACTTAGTTAGCCCTCCCTTCAAGGCG72478586CCGAATCTGACTTGGACAGAGTGTAGCAGCGCGGAAATTGCTAGTTAT
Bufo bufo genome assembly, chromosome: 2.
LR991668.1:198164405-198164422
ATCTGTATTTTGATGTAACCTGAACTGAAT198164405CCGAATCTGACTTGGACAAACGTTTTTTCACCTAACCGTTTTCACTTT
Knipowitschia caucasica genome assembly, chromosome: 5.
OZ035827.1:30095552-30095569
CCTCCTCGTTCGGGGGCGACACCAGCAGAT30095552CCGAATCTGACTTGGACAGACTCCTCGCCAGCTTCAGGTCTCCGGGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tgtccaagtcagattcgg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tgtccaagtcagattcgg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.728 | 0.719 | search_plus_done; http://172.18.8.135:50800/match?q=TGTCCAAGTCAGATTCGG&k=0&no_gap=0&offset=0&limit=50
1.373 | 0.644 | search_minus_done; http://172.18.8.135:50800/match?q=CCGAATCTGACTTGGACA&k=0&no_gap=0&offset=0&limit=10
1.398 | 0.025 | cgi_end;

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