GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 00:53:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:114221-114242
GGTTTGAAAGATCAGAGTCTCAGTCTGAAT114221TGTCCAGTGGAACTTCGGATGCCTTAGCAATAGAGCAACGTCGAGCTTACAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7191.
FX691751.1:3699-3720
TTGTAAGCTCGACGTTGCTCTATTGCTAAG3699GCATCCGAAGTTCCACTGGACAATTCAGACTGAGACTCTGATCTTTCAAACC
BOGDQ76TF BOGD Brassica oleracea genomic clone BOGDQ76, genomic survey sequence.
BH535197.1:55-76
TTGTAAGCTCGACGTTGCTCTATTGCTAAG55GCATCCGAAGTTCCACTGGACAATTCAGACTGAGACTCTGATCTTTCAAACC
BOT01-98F7TR BOT01 Brassica oleracea genomic clone BOT01-98F7, genomic survey sequence.
FI748401.1:592-613
TTGTAAGCTCGACGTTGCTCTATTGCTAAG592GCATCCGAAGTTCCACTGGACAATTCAGACTGAGACTCTGATCTTTCAAACC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A10 clone KBrB119O22, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC234732.1:80180-80201
TTGTAAGCTCGACGTTGCTCTATTGCTAAG80180GCATCCGAAGTTCCACTGGACAATTCAGACTGAGACTCTGATCTTTCAAACC
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41562671-41562692
TTGTAAGCTCGACGTTGCTCTATTGCTAAG41562671GCATCCGAAGTTCCACTGGACAATTCAGACTGAGACTCTGATCTTTCAAACC
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50800433-50800454
TTGTAAGCTCGACGTTGCTCTATTGCTAAG50800433GCATCCGAAGTTCCACTGGACAATTCAGACTGAGACTCTGATCTTTCAAACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tgtccagtggaacttcggatgc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tgtccagtggaacttcggatgc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=TGTCCAGTGGAACTTCGGATGC&k=0&no_gap=0&offset=0&limit=50
0.196 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=GCATCCGAAGTTCCACTGGACA&k=0&no_gap=0&offset=0&limit=49
0.200 | 0.004 | cgi_end;

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