GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:03:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. viridis mRNA, clone: KALE-034J08, 3' end sequence.
DK528387.1:363-382
GCATCGAAGGAGCGCGTTCGAAGCTTGAGA363TGTGGAGGACGGAGCTGCCACCGTTGTACGACATAGGGTCAAGCCAAGTG
Brassica oleracea var. viridis mRNA, clone: KALE-075O14, 3' end sequence.
DK544167.1:281-300
GCATCGAAGGAGCGCGTTCGAAGCTTGAGA281TGTGGAGGACGGAGCTGCCACCGTTGTACGACATAGGGTCAAGCCAAGTG
Brassica oleracea var. viridis mRNA, clone: KALE-139O13, 3' end sequence.
DK568611.1:280-299
GCATCGAAGGAGCGCGTTCGAAGCTTGAGA280TGTGGAGGACGGAGCTGCCACCGTTGTACGACATAGGGTCAAGCCAAGTG
44JK5DM_UP_003_E03_25MAY2004_023 44JK5DM Brassica napus cDNA 5', mRNA sequence.
ES265606.1:83-102
GCATCGAAGGAGCACGTTCGAAGCTCGAGA83TGTGGAGGACGGAGCTGCCACCGT
40JKME7D_UP_041_C05_18JUN2006_043 40JKME7D Brassica napus cDNA 5', mRNA sequence.
ES981030.1:174-193
GCATCGAAGGAGCACGTTCGAAGCTCGAGA174TGTGGAGGACGGAGCTGCCACCGTTGTACGACATAGGGTCAAGCCAAGTG
BNAPO1GH_T3_015_D10_15JUN2007_074 BNAPO1GH Brassica napus cDNA 5', mRNA sequence.
GR451475.1:142-161
GCATCGAAGGAGCACGTTCGAAGCTCGAGA142TGTGGAGGACGGAGCTGCCACCGTTGTACGACATAGGGTCAAGCCAAGTG
BNAPO3GH_T3_012_H06_13JULY2007_034 BNAPO3GH Brassica napus cDNA 5', mRNA sequence.
GR456848.1:636-655
GCATCGAAGGAGCACGTTCGAAGCTCGAGA636TGTGGAGGACGGAGCTGCCACCGTTGTACGACATAGGGTCAAGCCAAGTG
BNAPO3GH_T3_017_F12_13JULY2007_086 BNAPO3GH Brassica napus cDNA 5', mRNA sequence.
GR457272.1:245-264
GCATCGAAGGAGCACGTTCGAAGCTCGAGA245TGTGGAGGACGGAGCTGCCACCGTTGTACGACATAGGGTCAAGCCAAGTG
JSPRRC001_19-G08-T3 Chromera velia CvLp_vc08/1 cDNA library Chromera velia cDNA, mRNA sequence.
HO866106.1:223-242
ACTCTACAATCTCAAACGTAATCCCTGCAA223TGTGGAGGACGGAGCTGCCATTGGATTTTCTCACGCCAAGCCCTGCCCCT
oef97f09.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH997354.1:495-514
GCATCGAAGGAGCGCGTTCGAAGCTTGAGA495TGTGGAGGACGGAGCTGCCACCGTTGTACGACATAGGGTCAAGCCAAGTG
BOT01-1E21TF BOT01 Brassica oleracea genomic clone BOT01-1E21, genomic survey sequence.
FI678211.1:11-30
AAGCTTGAGA11TGTGGAGGACGGAGCTGCCACCGTTGTACGACATAGGGTCAAGCCAAGTG
BOT01-33N5TF BOT01 Brassica oleracea genomic clone BOT01-33N5, genomic survey sequence.
FI701998.1:5-24
GAGA5TGTGGAGGACGGAGCTGCCACCGTTGTACGACATAGGGTCAAGCCAAGTG
BoT01-1E21-F BOTO1 Brassica oleracea genomic clone 1E21, genomic survey sequence.
KG699573.1:11-30
AAGCTTGAGA11TGTGGAGGACGGAGCTGCCACCGTTGTACGACATAGGGTCAAGCCAAGTG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:982708-982727
GCATCGAAGGAGCGCGTTCGAAGCTTGAGA982708TGTGGAGGACGGAGCTGCCACCGTTGTACGACATAGGGTCAAGCCAAGTG
Aurantimicrobium sp. INA4 DNA, complete genome.
AP027040.1:813839-813858
GTTCTGTACCGCCTGTGCAAGACGTTCATC813839TGTGGAGGACGGAGCTGCCAAGAACACGCGATCTAGGTCATACTTTTCTG
Microchirus variegatus genome assembly, chromosome: 17.
OY735190.1:2030319-2030338
TATATTTGGCCTTCTTCATTCTCTTGTGCC2030319TGGCAGCTCCGTCCTCCACACTCTAACGCTGCGTGTCCTCTGAAAACCTG
BNAPO2GH_T3_021_F09_20JUN2007_069 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR454776.1:445-464
CACTTGGCTTGACCCTATGTCGTACAACGG445TGGCAGCTCCGTCCTCCACATCTCAAGCTTCGAACGCGCTCCTTCGATGC
BNAPO3GH_T3_016_B07_13JULY2007_061 BNAPO3GH Brassica napus cDNA 5', mRNA sequence.
GR457136.1:448-467
CACTTGGCTTGACCCTATGTCGTACAACGG448TGGCAGCTCCGTCCTCCACATCTCGAGCTTCGAACGTGCTCCTTCGATGC
TSA: Chromera velia contig10784.ChveCCMP2878 mRNA sequence.
JO787127.1:410-429
AGGGGCAGGGCTTGGCGTGAGAAAATCCAA410TGGCAGCTCCGTCCTCCACATTGCAGGGATTACGTTTGAGATTGTAGAGT
TSA: Chromera velia contig11703.ChveCCMP2878 mRNA sequence.
JO796678.1:410-429
AGGGGCAGGGCTTGGCGTGAGAAAATCCAA410TGGCAGCTCCGTCCTCCACATTGCAGGGATTACGTTTGAGATTGTAGAGT
TSA: Chromera velia contig26964.ChveCCMP2878 mRNA sequence.
JO801337.1:410-429
AGGGGCAGGGCTTGGCGTGAGAAAATCCAA410TGGCAGCTCCGTCCTCCACATTGCAGGGATTACGTTTGAGATTGTAGAGT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:68724995-68725014
CACTTGGCTTGACCCTATGTCGTACAACGG68724995TGGCAGCTCCGTCCTCCACATCTCGAGCTTCGAACGTGCTCCTTCGATGC
Brassica napus genome assembly, chromosome: A09.
HG994363.1:52679512-52679531
CACTTGGCTTGACCCTATGTCGTACAACGG52679512TGGCAGCTCCGTCCTCCACATCTCGAGCTTCGAACGTGCTCCTTCGATGC
Brassica napus genome assembly, chromosome: C08.
HG994372.1:40703614-40703633
CACTTGGCTTGACCCTATGTCGTACAACGG40703614TGGCAGCTCCGTCCTCCACATCTCAAGCTTCGAACGCGCTCCTTCGATGC
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:49979503-49979522
CACTTGGCTTGACCCTATGTCGTACAACGG49979503TGGCAGCTCCGTCCTCCACATCTCAAGCTTCGAACGCGCTCCTTCGATGC
Aurantimicrobium minutum DNA, complete genome, strain: KNC.
AP017457.1:576191-576210
CAGAAAAATATGACCTAGATCGCGTGTTCT576191TGGCAGCTCCGTCCTCCACAGATGAACGTCTTGCACAGGCGGTACAGAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tgtggaggacggagctgcca
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tgtggaggacggagctgcca | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.911 | 0.902 | search_plus_done; http://172.18.8.135:50400/match?q=TGTGGAGGACGGAGCTGCCA&k=0&no_gap=0&offset=0&limit=50
1.212 | 0.301 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCAGCTCCGTCCTCCACA&k=0&no_gap=0&offset=0&limit=35
1.220 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).