GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:54:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS13008F08 KS13 Capsicum annuum cDNA, mRNA sequence.
GD052774.1:73-97
TTCTCTCAATGGCGGCGGCGAGGATTGCAT73TGTTGAAATACCTAAGAGTCGAAGCTCGATCAGCTCAATTCCAAAACCCTAGAAT
TSA: Capsicum annuum CM_MegaContig_13425 mRNA sequence.
JW101087.1:86-110
TTCTCTCAATGGCGGCGGCGAGGATTGCAT86TGTTGAAATACCTAAGAGTCGAAGCTCGACCAGCTCAATTCCAAAACCCTAGAAT
TSA: Capsicum annuum EJ_MegaContig_29113, mRNA sequence.
JW135027.1:743-767
ATTCTAGGGTTTTGGAATTGAGCTGGTCGA743GCTTCGACTCTTAGGTATTTCAACAATGCAATCCTCGCCGCCGCCATTGAGAGAA
TSA: Capsicum annuum MA_MegaContig_34976, mRNA sequence.
JW160895.1:742-766
ATTCTAGGGTTTTGGAATTGAGCTGGTCGA742GCTTCGACTCTTAGGTATTTCAACAATGCAATCCTCGCCGCCGCCATTGAGAGAA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:4151166-4151190
ATTCTAGGGTTTTGGAATTGAGCTGATCGA4151166GCTTCGACTCTTAGGTATTTCAACAATGCAATCCTCGCCGCCGCCATTGAGAGAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 5.
CP124727.1:4742697-4742721
ATTCTAGGGTTTTGGAATTGAGCTGATCGA4742697GCTTCGACTCTTAGGTATTTCAACAATGCAATCCTCGCCGCCGCCATTGAGAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tgttgaaatacctaagagtcgaagc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tgttgaaatacctaagagtcgaagc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.220 | 0.212 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTGAAATACCTAAGAGTCGAAGC&k=0&no_gap=0&offset=0&limit=50
0.289 | 0.069 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTCGACTCTTAGGTATTTCAACA&k=0&no_gap=0&offset=0&limit=48
0.292 | 0.003 | cgi_end;

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