GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 20:24:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil cDNA clone:jm19h09, 5' end, single read.
BJ556183.1:39-62
ATTCCCTTCCGAATCAAACATTTATTTTTT39TTAACAAAAGGGAGTACGGAGCGAAGGCCCCTCGCTCTCTCTCTCTCTCTCTCT
Ipomoea nil cDNA clone:jm8j13, 5' end, single read.
BJ565549.1:39-62
ATTCCCTTCCGAATCAAACATTTATTTTTT39TTAACAAAAGGGAGTACGGAGCGAAGGCCCCTCGCTCTCTCTCTCTCTCTCTCT
Ipomoea nil cDNA clone:jmsf22g06, 5' end.
CJ741717.1:42-65
ATTCCCTTCCGAATCAAACATTTATTTTTT42TTAACAAAAGGGAGTACGGAGCGAAGGCCCCTCGCTCTCTCTCTCTCTCTCTCT
Ipomoea nil cDNA clone:jmsf47i14, 5' end.
CJ749290.1:40-63
ATTCCCTTCCGAATCAAACATTTATTTTTT40TTAACAAAAGGGAGTACGGAGCGAAGGCCCCTCGCTCTCTCTCTCTCTCTCTCT
Ipomoea nil cDNA clone:jmsf44n16, 5' end.
CJ754756.1:40-63
ATTCCCTTCCGAATCAAACATTTATTTTTT40TTAACAAAAGGGAGTACGGAGCGAAGGCCCCTCGCTCTCTCTCTCTCTCTCTCT
Ipomoea nil mRNA, clone: jm44h04, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY924230.1:39-62
ATTCCCTTCCGAATCAAACATTTATTTTTT39TTAACAAAAGGGAGTACGGAGCGAAGGCCCCTCGCTCTCTCTCTCTCTCTCTCT
Ipomoea nil mRNA, clone: JMFS035E06, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY938618.1:30-53
TTCCCTTCCGAATCAAACATTTATTTTTT30TTAACAAAAGGGAGTACGGAGCGAAGGCCCCTCGCTCTCTCTCTCTCTCTCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ttaacaaaagggagtacggagcga
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ttaacaaaagggagtacggagcga | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.796 | 0.787 | search_plus_done; http://172.18.8.135:50400/match?q=TTAACAAAAGGGAGTACGGAGCGA&k=0&no_gap=0&offset=0&limit=50
0.882 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=TCGCTCCGTACTCCCTTTTGTTAA&k=0&no_gap=0&offset=0&limit=43
0.882 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).