GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-19 06:24:16, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:51190520-51190543
GTTTCCCTCTACCCTCCTTAATTTAATGTA51190520TTATGTACCAACTTTGCTAACCTCTCATTGAAAAGCAGAAACAAACAATAAAGC
Malus domestica cultivar Red Fuji chromosome 15.
CP147807.1:43233464-43233487
GTTTCCCTCTACCCTCCTTAATTTAATGTA43233464TTATGTACCAACTTTGCTAACCTCTCATTGAAAAGCAGAAACAAACAATAAAGC
Malus domestica cultivar Red Fuji chromosome 15.
CP147816.1:42281945-42281968
GTTTCCCTCTACCCTCCTTAATTTAATGTA42281945TTATGTACCAACTTTGCTAACCTCTCATTGAAAAGCAGAAACAAACAATAAAGC
Malus domestica cultivar WA 38 chromosome 15B.
CP165698.1:50980641-50980664
GTTTCCCTCTACCCTCCTTAATTTAATGTA50980641TTATGTACCAACTTTGCTAACCTCTCATTGAAAAGCAGAAACAAACAATAAAGC
Malus domestica cultivar WA 38 chromosome 15A.
CP165715.1:50799392-50799415
GTTTCCCTCTACCCTCCTTAATTTAATGTA50799392TTATGTACCAACTTTGCTAACCTCTCATTGAAAAGCAGAAACAAACAATAAAGC
Malus domestica cultivar Golden Delicious chromosome 15.
CP168779.1:49861959-49861982
GTTTCCCTCTACCCTCCTTAATTTAATGTA49861959TTATGTACCAACTTTGCTAACCTCTCATTGAAAAGCAGAAACAAACAATAAAGC
Malus domestica cultivar Golden Delicious chromosome 15.
CP168796.1:50597335-50597358
GTTTCCCTCTACCCTCCTTAATTTAATGTA50597335TTATGTACCAACTTTGCTAACCTCTCATTGAAAAGCAGAAACAAACAATAAAGC
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:49322797-49322820
GTTTCCCTCTACCCTCCTTAATTTAATGTA49322797TTATGTACCAACTTTGCTAACCTCTCATTGAAAAGCAGAAACAAACAATAAAGC
Malus domestica genome assembly, chromosome: 15.
OU696691.1:51030091-51030114
GTTTCCCTCTACCCTCCTTAATTTAATGTA51030091TTATGTACCAACTTTGCTAACCTCTCATTGAAAAGCAGAAACAAACAATAAAGC
Malus domestica genome assembly, chromosome: 15.
OU744556.1:50953698-50953721
GTTTCCCTCTACCCTCCTTAATTTAATGTA50953698TTATGTACCAACTTTGCTAACCTCTCATTGAAAAGCAGAAACAAACAATAAAGC
Malus domestica genome assembly, chromosome: 15.
OU744967.1:51448784-51448807
GTTTCCCTCTACCCTCCTTAATTTAATGTA51448784TTATGTACCAACTTTGCTAACCTCTCATTGAAAAGCAGAAACAAACAATAAAGC
Malus domestica genome assembly, chromosome: 15.
OU745005.1:50511070-50511093
GTTTCCCTCTACCCTCCTTAATTTAATGTA50511070TTATGTACCAACTTTGCTAACCTCTCATTGAAAAGCAGAAACAAACAATAAAGC
Mdrtb1024H12.g1 Apple_EST_Mdrtb Malus domestica cDNA 5', mRNA sequence.
GO516389.1:204-227
GCTTTATTGTTTGTTTCTGCTTTTCAATGA204GAGGTTAGCAAAGTTGGTACATAATACATTAAATTAAGGAGGGTAGAGGGAAAC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:5591345-5591368
GCTTTATTGTTTGTTTCTGCTTTTCAATGA5591345GAGGTTAGCAAAGTTGGTACATAATACATTAAATTAAGGAGGGTAGAGGGAAAC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:4883202-4883225
GCTTTATTGTTTGTTTCTGCTTTTCAATGA4883202GAGGTTAGCAAAGTTGGTACATAATACATTAAATTAAGGAGGGTAGAGGGAAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ttatgtaccaactttgctaacctc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ttatgtaccaactttgctaacctc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.199 | 0.190 | search_plus_done; http://172.18.8.135:50800/match?q=TTATGTACCAACTTTGCTAACCTC&k=0&no_gap=0&offset=0&limit=50
0.355 | 0.157 | search_minus_done; http://172.18.8.135:50800/match?q=GAGGTTAGCAAAGTTGGTACATAA&k=0&no_gap=0&offset=0&limit=38
0.357 | 0.002 | cgi_end;

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