GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 20:01:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil mRNA, clone: JMFS021E10, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY937531.1:57-80
CTCTTTCTCTCCTACCTCTGAAATACAGTA57TTCAGAAAGCACCAGCAAAGATGTTAATGTCCACCCACCAACGCCTATAATCTC
Ipomoea nil mRNA, clone: JMFS025B02, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY937823.1:64-87
CTCTTTCTCTCCTACCTCTGAAATACAGTA64TTCAGAAAGCACCAGCAAAGATGTTAATGTCCACCCACCAACGCCTATAATCTC
TSA: Ipomoea batatas Contig_28957.Ipbalsr mRNA sequence.
JP133545.1:82-105
TGCTCTCTCTCATACCTCTGAAATACAGTA82TTCAGAAAGCACCAGCAAAGATGTTAATGTCCACCCACCAACGCCTCTAATCTC
Ipomoea trifida cultivar NCNSP0306 chromosome 4.
CP025647.1:14397059-14397082
GAGATTAGAGGCGTTGGTGGGTGGACATTA14397059ACATCTTTGCTGGTGCTTTCTGAATACTGTATTTCAGAGGTAGGAGAGAGAGCA
Ipomoea triloba cultivar NCNSP0323 chromosome 4.
CP025663.1:17579269-17579292
GAGATTAGAGGCGTTGGTGGGTGGACATTA17579269ACATCTTTGCTGGTGCTTTCTGAATACTGTATTTCAGAGGTAGGAGAGAGAGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ttcagaaagcaccagcaaagatgt
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ttcagaaagcaccagcaaagatgt | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.285 | 0.277 | search_plus_done; http://172.18.8.135:50400/match?q=TTCAGAAAGCACCAGCAAAGATGT&k=0&no_gap=0&offset=0&limit=50
0.320 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=ACATCTTTGCTGGTGCTTTCTGAA&k=0&no_gap=0&offset=0&limit=47
0.322 | 0.002 | cgi_end;

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