GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-16 05:44:10, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141965.1:40312412-40312431
TGCCCATTTCCTCCATAAAACCTCTCCGAA40312412TTCATCGTTCCCTCTCCAACAAACAAAACTCTCTCTAACCCATTTTCCCT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:780978-780997
TGGGCGTTTCCTCCATAAAACCTCCCCGAT780978TTCATCGTTCCCTCTCCAACAAACAAAACTCCCTACCCATTTTTCCATTG
Malus domestica cultivar Red Fuji chromosome 13.
CP147814.1:43337303-43337322
TGCCCATTTCCTCCATAAAACCTCTCCGAA43337303TTCATCGTTCCCTCTCCAACAAACAAAACTCTCTCTAACCCATTTTCCCT
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141922.1:532918-532937
AGGGAAAATGGGTTGGAGAGAGTTTTGTTT532918GTTGGAGAGGGAACGATGAATTCGGAGAGGTTTTATGGAGGAAATGGACA
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:553148-553167
AGGGAAAATGGGTTAGAGAGAGTTTTGTTT553148GTTGGAGAGGGAACGATGAATTCGGAGAGGTTTTATGGAGGAAATGGGCA
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:540372-540391
TGGAAAAATGGGTTAGAGGGAGTTTTGTTT540372GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:564276-564295
CAATGGAAAAATGGGTAGGGAGTTTTGTTT564276GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141982.1:33347429-33347448
AGGGAAAATGGGTTAGAGAGAGTTTTGTTT33347429GTTGGAGAGGGAACGATGAATTCGGAGAGGTTTTATGGAGGAAATGGGCA
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143370.1:569119-569138
AGGGAAAATGGGTTAGAGAGAGTTTTGTTT569119GTTGGAGAGGGAACGATGAATTCGGAGAGGTTTTATGGAGGAAATGGGCA
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:555033-555052
TGGAAAAATGGGTTAGAGGGAGTTTTGTTT555033GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143387.1:540679-540698
AGGGAAAATGGGTTAGAGAGAGTTTTGTTT540679GTTGGAGAGGGAACGATGAATTCGGAAAGGTTTTATGGAGGAAATGGGCA
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:492497-492516
AGGAAAAATGGGTTAGAGGGAGTTTTGTTT492497GTTGGAGAGGGAACGATGAAATCGGAGAGGTTTTATGGAGGAAACGCCCA
Malus domestica cultivar Red Fuji chromosome 16.
CP147808.1:551590-551609
TGGAAAAATGGGTTAGAGGGAGTTTTGTTT551590GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus domestica cultivar Red Fuji chromosome 16.
CP147817.1:531121-531140
AGGAAAAATGGGTTAGAGGGAGTTTTGTTT531121GTTGGAGAGGGAACGATGAAATCGGAGAGGTTTTATGGAGGAAACGCCCA
Malus domestica cultivar Red Fuji chromosome 16.
CP147817.1:536038-536057
TGGAAAAATGGGTTAGAGGGAGTTTTGTTT536038GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus ioensis cultivar PI590015 chromosome 16.
CP154739.1:538005-538024
AGGAAAAATGGGTTAGAGGGAGTTTTGTTT538005GTTGGAGAGGGAACGATGAAATCGGAGAGGTTTTATGGAGGAAACGCCCA
Malus ioensis cultivar PI590015 chromosome 16.
CP154756.1:513533-513552
AGGAAAAATGGGTTAGAGGGAGTTTTGTTT513533GTTGGAGAGGGAACGATGAAATCGGAGAGGTTTTATGGAGGAAACGCCCA
Malus coronaria cultivar PI590014 chromosome 16.
CP154773.1:452426-452445
AGGAAAAATGGGTTAGAGGGAGTTTTGTTT452426GTTGGAGAGGGAACGATGAAATCGGAGAGGTTTTATGGAGGAAACGCCCA
Malus coronaria cultivar PI590014 chromosome 16.
CP154790.1:522633-522652
AGGAAAAATGGGTTAGAGGGAGTTTTGTTT522633GTTGGAGAGGGAACGATGAAATCGGAGAGGTTTTATGGAGGAAACGCCCA
Malus domestica cultivar WA 38 chromosome 13B.
CP165696.1:565236-565255
AGGGAAAATGGGTTAGAGAGAGTTTTGTTT565236GTTGGAGAGGGAACGATGAATTCGGAGAGGTTTTATGGAGGAAATGGGCA
Malus domestica cultivar WA 38 chromosome 16B.
CP165699.1:549488-549507
TGGAAAAATGGGTTAGAGGGAGTTTTGTTT549488GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus domestica cultivar Golden Delicious chromosome 13.
CP168777.1:568727-568746
AGGGAAAATGGGTTAGAGAGAGTTTTGTTT568727GTTGGAGAGGGAACGATGAATTCGGAGAGGTTTTATGGAGGAAATGGGCA
Malus domestica cultivar Golden Delicious chromosome 16.
CP168780.1:582680-582699
AGGAAAAATGGGTTAGAGGGAGTTTTGTTT582680GTTGGAGAGGGAACGATGAAATCGGAGAGGTTTTATGGAGGAAACGCCCA
Malus domestica cultivar Golden Delicious chromosome 16.
CP168780.1:587597-587616
TGGAAAAATGGGTTAGAGGGAGTTTTGTTT587597GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus domestica cultivar Golden Delicious chromosome 16.
CP168797.1:534385-534404
AGGAAAAATGGGTTAGAGGGAGTTTTGTTT534385GTTGGAGAGGGAACGATGAAATCGGAGAGGTTTTATGGAGGAAACGCCCA
Malus domestica cultivar Golden Delicious chromosome 16.
CP168797.1:539302-539321
TGGAAAAATGGGTTAGAGGGAGTTTTGTTT539302GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:553595-553614
AGGGAAAATGGGTTAGAGAGAGTTTTGTTT553595GTTGGAGAGGGAACGATGAATTCGGAGAGGTTTTATGGAGGAAATGGGCA
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:571208-571227
CAATGGAAAAATGGGTAGGGAGTTTTGTTT571208GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus domestica genome assembly, chromosome: 16.
OU696692.1:564221-564240
CAATGGAAAAATGGGTAGGGAGTTTTGTTT564221GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus domestica genome assembly, chromosome: 16.
OU744557.1:551204-551223
TGGAAAAATGGGTTAGAGGGAGTTTTGTTT551204GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus domestica genome assembly, chromosome: 13.
OU744965.1:573094-573113
AGGGAAAATGGGTTAGAGAGAGTTTTGTTT573094GTTGGAGAGGGAACGATGAATTCGGAGAGGTTTTATGGAGGAAATGGGCA
Malus domestica genome assembly, chromosome: 16.
OU744968.1:550968-550987
TGGAAAAATGGGTTAGAGGGAGTTTTGTTT550968GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus domestica genome assembly, chromosome: 16.
OU745006.1:558304-558323
TGGAAAAATGGGTTAGAGGGAGTTTTGTTT558304GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:568787-568806
TGGAAAAATGGGTTAGAGGGAGTTTTGTTT568787GTTGGAGAGGGAACGATGAAATCGGGGAGGTTTTATGGAGGAAACGCCCA
Malus x robusta genome assembly, chromosome: 9.
OY720333.1:517150-517169
AGGGAAAATGGGTTAGAGAGAGTTTTGTTT517150GTTGGAGAGGGAACGATGAATTCGGAGAGGTTTTATGGAGGAAATGGGCA
Crataegus laevigata genome assembly, chromosome: 11.
OY756948.1:600356-600375
AGGAAAAATGGGTTAGAGGGAGTTTTGTTT600356GTTGGAGAGGGAACGATGAAATCGGAGAGGTTTTATGGAGGAAATGCCCA
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:498404-498423
AGGAAAAATGGGTTAGAGGGAGTTTTGTTT498404GTTGGAGAGGGAACGATGAAATCGGAGAGGTTTTATGGAGGAAATGCCCT
Filipendula ulmaria genome assembly, chromosome: 7.
OZ121602.1:835252-835271
GCGGAGAAAGCAAAGGAAGAAGGAAATGGT835252GTTGGAGAGGGAACGATGAAACCGGAGAGGTTTTATGGAGGAAAAGGCCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ttcatcgttccctctccaac
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ttcatcgttccctctccaac | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.613 | 0.604 | search_plus_done; http://172.18.8.135:50800/match?q=TTCATCGTTCCCTCTCCAAC&k=0&no_gap=0&offset=0&limit=50
1.318 | 0.705 | search_minus_done; http://172.18.8.135:50800/match?q=GTTGGAGAGGGAACGATGAA&k=0&no_gap=0&offset=0&limit=47
1.342 | 0.024 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).