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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:07:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:24034976-24034995
ATTACTAACAAGAGCAATATACTCCTCCTT24034976TTCCCCATCATCGATCTCTCCGCTTCTCACTCACAATCTTGCACAGAGAG
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141934.1:25597231-25597250
ATTACTAACAAGAGCAATATACTCCTCCTT25597231TTCCCCATCATCGATCTCTCCGCTTCTCACTCACAATCTTGCACAGAGAG
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:29725938-29725957
CCCATTACTAACAAGAGCAATACACTCCTT29725938TTCCCCATCATCGATCTCTCCGCTTTTCACTCACAATCTTGCACAGAGAG
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141960.1:24565437-24565456
ATTTCTAACAAGAGCAATATACTCCTCCTT24565437TTCCCCATCATCGATCTCTCCGCTTCTCACTCACAATCTTGCACAGAGAG
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141977.1:24497152-24497171
ATTACTAACAAGAGCAATATACTCCTCCTT24497152TTCCCCATCATCGATCTCTCCGCTTCTCACTCACAATCTTGCACACAGTG
Vicia faba genome assembly, chromosome: 6.
OX451741.1:169559581-169559600
AAGTAAAGATACAAATACCAGAACAAAGCT169559581TTCCCCATCATCGATCTCTCCGCCTCGGCCATCGGAGAACGCCTCCTGTC
Persicaria maculosa genome assembly, chromosome: 8.
OY998258.1:71462453-71462472
TCGACTCCCCTCAGCTCCCTCTCCATCTCT71462453TTCCCCATCATCGATCTCTCTATCCCTCGTTTAACCGGTGAGGCCCGAAG
Lasius fuliginosus genome assembly, chromosome: 4.
OX424446.1:12067093-12067112
TTTGACGTGGTCTCACTCGACTCGGGCATT12067093TTCCCCATCATCGATCTCTCCTCTCCGTCGACGTACTCTCATCACCATTA
Rhinatrema bivittatum genome assembly, chromosome: 3.
LR584389.1:61681530-61681549
GTATGCATTTGATAATGTACGAGTGGAACA61681530GAGAGATCGATGATGGGGAATGATAAAAAAAAAAAAAAAGACCGTATTTA
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143365.1:5767605-5767624
CTCTCTGTGCAAGATTGTGAGTGAGAAGCG5767605GAGAGATCGATGATGGGGAAAAGGAGGAGTATATTGCTCTTGTTAGTAAT
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143382.1:5643077-5643096
CTCTCTGTGCAAGATTGTGAGTGAGAAGCG5643077GAGAGATCGATGATGGGGAAAAGGAGGAGTGTATTGCTCTTGTTAGTAAT
Malus sylvestris genome assembly, chromosome: 8.
OU696510.1:5698221-5698240
CTCTCTGTGCAAGATTGTGAGTGAGAAGCG5698221GAGAGATCGATGATGGGGAAAAGGAGGAGTATATTGCTCTTGTTAGTAAT
Malus domestica genome assembly, chromosome: 8.
OU744549.1:5692485-5692504
CTCTCTGTGCAAGATTGTGAGTGAGAAGCG5692485GAGAGATCGATGATGGGGAAAAGGAGGAGTATATTGCTCTTGTTAGTAAT
Malus domestica genome assembly, chromosome: 8.
OU744960.1:5662181-5662200
CTCTCTGTGCAAGATTGTGAGTGAGAAGCG5662181GAGAGATCGATGATGGGGAAAAGGAGGAGTATATTGCTCTTGTTAGTAAT
Malus domestica genome assembly, chromosome: 8.
OU744998.1:5765241-5765260
CTCTGTGTGCAAGATTGTGAGTGAGAAGCG5765241GAGAGATCGATGATGGGGAAAAGGAGGAGTATATTGCTCTTGTTAGTAAT
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:5970520-5970539
CTCTCTGTGCAAGATTGTGAGTGAAAAGCG5970520GAGAGATCGATGATGGGGAAAAGGAGTGTATTGCTCTTGTTAGTAATGGG
Malus x robusta genome assembly, chromosome: 16.
OY720340.1:5390511-5390530
CTCTGTGTGCAAGATTGTGAGTGAGAAGCG5390511GAGAGATCGATGATGGGGAAAAGGAGGAGTGTATTGCTCTTGTTAGTAAT
Pyrus communis genome assembly, chromosome: 15.
OY757082.1:4277081-4277100
TCTGTGCTCTGCAAGATTTTGAGTGAAGCG4277081GAGAGATCGATGATGGGGAAAAGGAGTATATTGCTCTTGTTAGTAATGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ttccccatcatcgatctctc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ttccccatcatcgatctctc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.189 | 0.180 | search_plus_done; http://172.18.8.135:50400/match?q=TTCCCCATCATCGATCTCTC&k=0&no_gap=0&offset=0&limit=50
0.301 | 0.112 | search_minus_done; http://172.18.8.135:50400/match?q=GAGAGATCGATGATGGGGAA&k=0&no_gap=0&offset=0&limit=42
0.308 | 0.007 | cgi_end;

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