GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 02:07:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil cDNA clone:jm29c11, 5' end, single read.
BJ559605.1:272-295
TGGGAATGGGTTTTTGGTAACAGAGGTAAA272GGTTTTGGGGGAGCTAGAAGAGAATTTGAACCAGAAATGTCTGTGAAGAGCAGA
Ipomoea nil cDNA clone:jm32h10, 5' end, single read.
BJ560997.1:269-292
TGGGAATGGGTTTTTGGTAACAGAGGTAAA269GGTTTTGGGGGAGCTAGAAGAGAATTTGAACCAGAAATGTCTGTGAAGAGCAGA
Ipomoea nil cDNA clone:jm3i14, 5' end, single read.
BJ563560.1:105-128
TGGGAATGGGTTTTTGGTAACAGAGGTAAA105GGTTTTGGGGGAGCTAGAAGAGAATTTGAACCAGAAATGTCTGTGAAGAGCAGA
Ipomoea nil cDNA clone:jm40i14, 5' end, single read.
BJ563879.1:272-295
TGGGAATGGGTTTTTGGTAACAGAGGTAAA272GGTTTTGGGGGAGCTAGAAGAGAATTTGAACCAGAAATGTCTGTGAAGAGCANA
Ipomoea nil cDNA clone:jm9d09, 5' end, single read.
BJ565755.1:272-295
TGGGAATGGGTTTTTGGTAACAGAGGTAAA272GGTTTTGGGGGAGCTAGAAGAGAATTTGAACCAGAAATGTCTGTGAAGAGCAGA
Ipomoea nil cDNA clone:jmsf36g12, 5' end.
CJ747102.1:102-125
TGGGAATGGGTTTTTGGTAACAGAGGTAAA102GGTTTTGGGGGAGCTAGAAGAGAATTTGAACCAGAAATGTCTGTGAAGAGCAGA
Ipomoea nil cDNA clone:jmsf52l01, 5' end.
CJ751495.1:282-305
TGGGAATGGGTTTTTGGTAACAGAGGTAAA282GGTTTTGGGGGAGCTAGAAGAGAATTTGAACCAGAAATGTCTGTGAAGAGCAGA
Ipomoea nil mRNA, clone: jm42i11, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY923516.1:107-130
TGGGAATGGGTTTTTGGTAACAGAGGTAAA107GGTTTTGGGGGAGCTAGAAGAGAATTTGAACCAGAAATGTCTGTGAAGAGCAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ttctcttctagctcccccaaaacc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ttctcttctagctcccccaaaacc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.108 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTCTTCTAGCTCCCCCAAAACC&k=0&no_gap=0&offset=0&limit=50
0.380 | 0.272 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTTTGGGGGAGCTAGAAGAGAA&k=0&no_gap=0&offset=0&limit=50
0.386 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).