GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:27:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Ipomoea batatas Contig_4339.Ipbalsr mRNA sequence.
JP108927.1:1232-1255
GTGCAGAAGGTCTATTGAGTATTGCTGCTC1232TTGATTTCGCCCTTCCTTCAACTAAAACCTGCTCTTGAAGATAATCGTGTTGGG
Ipomoea nil cDNA clone:jmsf46d01, 5' end.
CJ755242.1:243-266
CCCAACACGATTATCTTCAAGACCAGGTTT243TAGTTGAAGGAAGGGCGAAATCAAGAGCAGCAATACTCAATAGACCTTCTGCAC
sp_d25_35 Sweetpotato cDNA library D Ipomoea batatas cDNA 5', mRNA sequence.
EE881232.1:299-322
CCCAACACGATTATCTTCAAGAACAGGTTT299TAGTTGAAGGAAGGGCGAAATCAAGAGCAGCAATACTCAATAGACCTTCTGCAC
Ipomoea trifida cultivar NCNSP0306 chromosome 15.
CP025658.1:21696091-21696114
AAATATATTTTTGGTTTTCATCATAGGTTT21696091TAGTTGAAGGAAGGGCGAAATCAAGAGCAGCAATACTCAATAGACCTTCTGCAC
Ipomoea triloba cultivar NCNSP0323 chromosome 15.
CP025674.1:26526627-26526650
AAAAATATTTTTGGTTTTCATCATAGGTTT26526627TAGTTGAAGGAAGGGCGAAATCAAGAGCAGCAATACTCAATAGACCTTCTGCAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ttgatttcgcccttccttcaacta
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ttgatttcgcccttccttcaacta | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.120 | 0.112 | search_plus_done; http://172.18.8.135:50400/match?q=TTGATTTCGCCCTTCCTTCAACTA&k=0&no_gap=0&offset=0&limit=50
0.236 | 0.116 | search_minus_done; http://172.18.8.135:50400/match?q=TAGTTGAAGGAAGGGCGAAATCAA&k=0&no_gap=0&offset=0&limit=49
0.238 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).