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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:16:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

ORNL094 Poplar BAC Library Populus trichocarpa genomic similar to Transcription factor, genomic survey sequence.
BH860620.1:1665-1688
GAATTGAAAGGAAACCCTGGAAACTCATCC1665TTGCAGTTTGTCCCACCTGGAAGCGCAACGCTCTCGGAGAAATCGAAAATCGAA
Populus trichocarpa clone Pop1-16J18, complete sequence.
AC149481.1:69227-69250
GAATTGAAAGGAAACCCTGGAAACTCATCC69227TTGCAGTTTGTCCCACCTGGAAGCGCAACGCTCTCGGAGAAATCGAAAATCGAA
Populus trichocarpa clone Pop1-12C14, complete sequence.
AC149541.1:71097-71120
GAATTGAAAGGAAACCCTGGAAACTCATCC71097TTGCAGTTTGTCCCACCTGGAAGCGCAACGCTCTCGGAGAAATCGAAAATCGAA
Populus balsamifera teosinte-branched-like protein (TB1) gene, partial cds.
EF396897.1:200-223
GAATTGAAAGGAAACCCTGGAAACTCATCC200TTGCAGTTTGTCCCACCTGGAAGCGCAACGCTCTCGGAGAAATCGAAAATCGAA
Populus deltoides teosinte-branched-like protein (TB1) gene, partial cds.
EF396898.1:203-226
GAATTCAAAGGAAACCCTGGAAACTCATCC203TTGCAGTTTGTCCCACCTGGAAGCGCAACGCTCTCGGAGAAATCGAAAATCGAA
Populus maximowiczii teosinte-branched-like protein (TB1) gene, partial cds.
EF396899.1:203-226
GAATTGAAAGGAAACCCTGGAAACTCATCC203TTGCAGTTTGTCCCACCTGGAAGCGCAACGCTCTCGGAGAAATCGAAAATCGAA
Populus nigra teosinte-branched-like protein (TB1) gene, partial cds.
EF396900.1:203-226
GAATTCAAAGGAAACCCTGGAAACTCATCC203TTGCAGTTTGTCCCACCTGGAAGCGCAACGCTCTCGGAGAAATCGAAAATCGAA
Populus trichocarpa teosinte-branched-like protein (TB1) gene, partial cds.
EF396901.1:203-226
GAATTGAAAGGAAACCCTGGAAACTCATCC203TTGCAGTTTGTCCCACCTGGAAGCGCAACGCTCTCGGAGAAATCGAAAATCGAA
Sequence 3498 from patent US 7989676.
GY313800.1:1083-1106
TTCGATTTTCGATTTCTCCGAGAGCGTTGC1083GCTTCCAGGTGGGACAAACTGCAAGGATGAGTTTCCAGGGTTTCCTTTCAATTC
Populus balsamifera subsp. trichocarpa teosinte-branched-like protein (TB1) gene, complete cds.
AF309092.1:1223-1246
TTCGATTTTCGATTTCTCCGAGAGCGTTGC1223GCTTCCAGGTGGGACAAACTGCAAGGATGAGTTTCCAGGGTTTCCTTTCAATTC
Populus balsamifera subsp. trichocarpa teosinte-branched-like protein (TB1) gene, complete cds.
AF309093.1:1170-1193
TTCGATTTTCGATTTCTCCGAGAGCGTTGC1170GCTTCCAGGTGGGACAAACTGCAAGGATGAGTTTCCAGGGTTTCCTTTCAATTC
Populus deltoides teosinte-branched-like protein (TB1) gene, complete cds.
AF309094.1:1171-1194
TTCGATTTTCGATTTCTCCGAGAGCGTTGC1171GCTTCCAGGTGGGACAAACTGCAAGGATGAGTTTCCAGGGTTTCCTTTGAATTC
Populus x canescens teosinte-branched-like protein 1 (TB1) gene, complete cds.
AY012515.1:1080-1103
TTCGATTTCCGATTTCTCTGAGAGTGTTGC1080GCTTCCAGGTGGGACAAACTGCAAGTATGAGTTTCTTCCTTTGAATTCTGACAT
Populus laurifolia teosinte-branched-like protein (TB1) gene, partial cds.
HQ902050.2:1103-1126
TTCGATTTTCGATTTCTCCGAGAGCGTTGC1103GCTTCCAGGTGGGACAAACTGCAAGGATGAGTTTCCAGGGTTTCCTTTCAATTC
Populus alba teosinte-branched-like protein (TB1) gene, partial cds.
JQ929733.1:1091-1114
TTCGATTTCCGATTTCTCTGAGAGTGTTGC1091GCTTCCAGGTGGGACAAACTGCAAGTATGAGTTTCTTCCTTTGAATTCTGACAT
Populus nigra genome assembly, chromosome: 10.
OX637681.1:9113344-9113367
TTCGATTTTCGATTTCTCCGAGAGCGTTGC9113344GCTTCCAGGTGGGACAAACTGCAAGGATGAGTTTCCAGGGTTTCCTTTGAATTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ttgcagtttgtcccacctggaagc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ttgcagtttgtcccacctggaagc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.188 | 0.179 | search_plus_done; http://172.18.8.135:50400/match?q=TTGCAGTTTGTCCCACCTGGAAGC&k=0&no_gap=0&offset=0&limit=50
0.302 | 0.114 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTCCAGGTGGGACAAACTGCAA&k=0&no_gap=0&offset=0&limit=42
0.308 | 0.005 | cgi_end;

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