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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 00:57:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Oryzias latipes strain HNI chromosome 5.
CP020783.1:4761985-4762002
AAAAATGGTCAGACACTTTGAGTCTGGAGT4761985TTTAGCCCCGGATGTGAGCAGTGGGCTGGGCATTATCTTAGCAACACG
Solanum pinnatisectum cultivar CGN17745 chromosome 6.
CP047568.1:42853492-42853509
AGCCTTCAGCAGATGTTGATGTGCTCTTGC42853492TTTAGCCCCGGATGTGAGCAGATCGTTGSTCGTTAGGGAATTCATATA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:71834763-71834780
TTGCTGGCCCCACCACCGCCTATGTCTGCT71834763TTTAGCCCCGGATGTGAGTAATTAATTAACCACGATCACGTTATATTA
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:29479421-29479438
TTGCTGGCCCCACCACCGCCTATGTCTGCT29479421TTTAGCCCCGGATGTGAGTAATTAATTAACCACGATCACGTTATATTA
Brassica napus genome assembly, chromosome: A04.
HG994358.1:23094365-23094382
TTGCTGGCCCCACCACCGCCTATGTCTGCT23094365TTTAGCCCCGGATGTGAGTAATTAATTAACCACGATCACGTTTTTTAT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53509765-53509782
TTGCTGGCCCCACCACCGCCTATGTCTGCT53509765TTTAGCCCCGGATGTGAGTAATTAATTAACCACGATCACATTATATAT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41676723-41676740
TTGCTGGCCCCACCACCGCCTATGTCTGCT41676723TTTAGCCCCGGATGTGAGTAATTAATTAACCACGATCACATTATATAT
Brassica rapa genome, scaffold: A04.
LR031576.1:21684999-21685016
TTGCTGGCCCCACCACCGCCTATGTCTGCT21684999TTTAGCCCCGGATGTGAGTAATTAATTAACCACGATCACGTTATATTA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50914821-50914838
TTGCTGGCCCCACCACCGCCTATGTCTGCT50914821TTTAGCCCCGGATGTGAGTAATTAATTAACCACACGATCACGTTATAT
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:22506563-22506580
TTGCTGGCCCCACCACCGCCTATGTCTGCT22506563TTTAGCCCCGGATGTGAGTAATTAATTAACCACGATCACGTTATATTA
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:46580477-46580494
TTGCTAGCTCCACCACCGCCTATGTCTGCT46580477TTTAGCCCCGGATGTGAGTAATTAATTAAATTATTAAACCACGATCAC
BOGYY16TF BOGY Brassica oleracea genomic clone BOGYY16, genomic survey sequence.
BH445615.1:260-277
TAATATAACGTGATCGTGGTTAATTAATTA260CTCACATCCGGGGCTAAAAGCAGACATAGGCGGTGGTGGGGCCAGCAA
KBrH065K17R KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis Brassica rapa subsp. pekinensis genomic clone KBrH065K17, genomic survey sequence.
DU979607.1:347-364
TAATATAACGTGATCGTGGTTAATTAATTA347CTCACATCCGGGGCTAAAAGCAGACATAGGCGGTGGTGGGGCCAGCAA
KBrH040C23F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH040C23, genomic survey sequence.
DX905671.1:381-398
AAAAAAAACGTGATCGTGGTTAATTAATTA381CTCACATCCGGGGCTAAAAGCAGACATAGGCGGTGGTGGGGCCAGCAA
BOT01-98F7TF BOT01 Brassica oleracea genomic clone BOT01-98F7, genomic survey sequence.
FI745390.1:381-398
TAATATAACGTGATCGTGGTTAATTAATTA381CTCACATCCGGGGCTAAAAGCAGACATAGGCGGTGGTGGGGCCAGCAA
BOT01-117M5TF BOT01 Brassica oleracea genomic clone BOT01-117M5, genomic survey sequence.
FI756913.1:426-443
TAATATAACGTGATCGTGGTTAATTAATTA426CTCACATCCGGGGCTAAAAGCAGACATAGGCGGTGGTGGGGCCAGCAA
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:7070026-7070043
GTGATCGTGGTTTAATAATTTAATTAATTA7070026CTCACATCCGGGGCTAAAAGCAGACATAGGCGGTGGTGGAGCTAGCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tttagccccggatgtgag
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tttagccccggatgtgag | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.387 | 0.377 | search_plus_done; http://172.18.8.135:50400/match?q=TTTAGCCCCGGATGTGAG&k=0&no_gap=0&offset=0&limit=50
0.583 | 0.197 | search_minus_done; http://172.18.8.135:50400/match?q=CTCACATCCGGGGCTAAA&k=0&no_gap=0&offset=0&limit=39
0.588 | 0.004 | cgi_end;

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