GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-22 06:11:04, GGGenome : DDBJ release 134.0, ENV division (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

MAG: Sphingobacteriales bacterium isolate Kalu_18-Q3-R12-55_MAXAC.067_cln chromosome, complete genome.
CP064999.1:2536900-2536914
GAAGATTTACCCATTTTAAATGAGTTGGGT2536900AATGTTGTCAATGAAAACACAGCCACCCGTCGGGATTTTCTAAAA
MAG: Thermoplasmata archaeon isolate bin983 chromosome.
CP070629.1:1625417-1625431
TATACCTTCGGGGGCGTGGGTTCCGGCGGG1625417AATGTTGTCAATGAATTATACGAGTATAATCCCGCAATGGATACC
MAG: Dehalococcoidia bacterium isolate bin708 chromosome.
CP070676.1:1163898-1163912
GGAATAACTGTTCACCGCCGCGATTGCTAC1163898AATGTTGTCAATGAAGAGGAAAAGGAGAGGCTGATAAAAGTGGAG
MAG: Candidatus Heimdallarchaeota archaeon isolate bin6 chromosome.
CP070695.1:309616-309630
CGGATCAAATATTTTTTTTTTCAGCTACAA309616AATGTTGTCAATGAATTATTACAATTTTCTCAGCTTTCGTATAAC
MAG: Candidatus Bathyarchaeota archaeon isolate bin519 chromosome.
CP070709.1:1115267-1115281
GCAAACTTGCATATTCCCCTCACAAAAAAC1115267AATGTTGTCAATGAACCGCGTTATTTAAACATTTCTTTTGGTGCT
MAG: Nitrospiraceae bacterium isolate bin398 chromosome.
CP070737.1:452733-452747
ATTGAAGTTCTGTACAGCCCTTATCCTGAC452733AATGTTGTCAATGAATTTTGAGACTTTTGCCTGATCCTGTTCATC
MAG: Lentisphaeria bacterium isolate nC33_lr_bin.207.fa chromosome.
CP091727.1:937032-937046
GCGCGGATGGCGCGTCAACTCAACGAAAGG937032AATGTTGTCAATGAATCAGTCCGCCTTCTCCGCCGTTACCGACCG
MAG: Candidatus Persebacteraceae bacterium AB1(2) chromosome, complete genome.
CP136751.1:827054-827068
GCATTCCGTTCCGGCCAAGGTAAAGCGATA827054AATGTTGTCAATGAACAAAAGCACATCCCGCCCTTCATCACGAAA
Uncultured stramenopile clone AA3F14RJ1F12 18S ribosomal RNA gene, partial sequence.
GU823247.1:964-978
GTTAACGAACGAGACCTTAGCCTGCTAAAT964AATGTTGTCAATGAATATTCATTGGCAGCGTTTCTTAGAGGGACA
Uncultured marine thaumarchaeote KM3_70_D07 genomic sequence.
KF901029.1:9827-9841
TGACCACGTGGGCTCACAACGCTTGCAAGA9827AATGTTGTCAATGAACCACTTCCAGTACCAATTTCAACAATTTTT
Saccharomyces kudriavzevii genome assembly, chromosome: 10.
LR215944.1:468222-468236
TGGTTACTTAATAAGTCATTTTGCTGTAGC468222AATGTTGTCAATGAAGTAAGTTCCGCAAGTAAAGTGGTGTTGAAA
MAG: Fisa-like virus clone V17D19D1 polyprotein gene, partial cds.
MG571973.1:1051-1065
CCCCTYGAACGAACAAAGGAATATTATGAG1051AATGTTGTCAATGAAGTTCTCTGTCGTGATCAGGAGCATGTCACT
MAG: viral metagenome isolate GVMAG-M-3300023184-16, sequence.
MN740015.1:212242-212256
GTTACCCTTTTTGAAAATTTGCACATCCAA212242AATGTTGTCAATGAATCGCATTTGTTGTAATATTTTTTCAATATG
MAG: Astroviridae sp. isolate tom152ast2, complete genome.
MN920667.1:3801-3815
TCTGGGCAATATTCGACAACTGTAGATAAC3801AATGTTGTCAATGAATGGTTAACAGCGTATGAGTTTGGCTATCTG
metagenome genome assembly, chromosome: 1.
OW818635.1:1509216-1509230
ATAATGAAAAAATTTTTAAATGGTGTTGAT1509216AATGTTGTCAATGAAATGCTAGAAGGTCTTGTCAAAGCGAACCCT
Caldilineaceae bacterium isolate ee78b5b4-03fb-4fb3-b3ee-46148e6ffba5 genome assembly, chromosome: 1.
OY729430.1:1112355-1112369
GACTTCGGATCCGGCTTGCACGAAACGGAA1112355AATGTTGTCAATGAAGAGCAGCACGTCCCGGCCTTCGTCCCGAAA
Intestinibacillus sp. isolate e60dd884-f413-4272-a0f1-c97aaf1151c3 genome assembly, chromosome: 1.
OY760624.1:325803-325817
TACTTCCGAACCCGCCTGCGTAAAACGGAA325803AATGTTGTCAATGAACAACAACACATCCTGACCTTCCTGGTCACG
Arenicellales bacterium isolate 84d41cb1-8764-43d3-92a7-53f72595dab7 genome assembly, chromosome: 1.
OY761535.1:3250429-3250443
CACCTCAACACCTGCCAGCGTATATCGGTA3250429AATGTTGTCAATGAAAAGCAGCACATCACGTCCTTCATCCCGGAA
Caldilineaceae bacterium isolate d6ad416f-72e4-436b-81d7-808e34538380 genome assembly, chromosome: 3.
OY761618.1:84388-84402
TACTTCAGAACCCGCCTGTACAAAACGGAA84388AATGTTGTCAATGAAGAGCAGAACGTCTCTGCCTTCATCTCTGAA
Methylococcales bacterium isolate 6b98c4a4-d9d8-4516-b822-97e2a8b70ebf genome assembly, chromosome: 2.
OY761816.1:125260-125274
TTCAAGCGGGTCCGAAGAAAAAATAGATAA125260AATGTTGTCAATGAACGACATTACTGATCCCCTTAAAACAATACA
Bacteroidales bacterium isolate cfd47556-b600-40b4-9185-b1262979a081 genome assembly, chromosome: 2.
OY762073.1:1447068-1447082
ATTTTGGAATCAAATTGAACAGGATAGCTT1447068AATGTTGTCAATGAATTTAAATAAACCTTTGTGCCATCAGATAAC
Mariniblastus sp. isolate 9516253c-0e2c-4cbb-9d0f-d3c6069c810a genome assembly, chromosome: 66.
OY762168.1:41738-41752
CTGATGGGTTACGTAGAGGTGTTGAAGTCC41738AATGTTGTCAATGAACTGAGTTCCAGTAAACACATCCGAAAACAC
Bacteroidaceae bacterium isolate bf6a184f-a0e0-46f4-9090-3ee23aba5b53 genome assembly, chromosome: 1.
OY764264.1:49-63
TCTGATCCACCTTTAGCACCACCCATTGGT49AATGTTGTCAATGAATTCTTGAATGTTTGTTCGAATGCTAAGAAT
Aminobacteriaceae bacterium isolate 73440aae-3b96-4bfa-a47d-8f80ded2de5b genome assembly, chromosome: 37.
OY764515.1:39018-39032
GTTCGTCTCTCAAGAATGAGCAAAGATGAG39018AATGTTGTCAATGAACGACTCTTTCTTGCAGAAGAAACTGCGCAT
uncultured Desulfosarcina sp. isolate addc1e71-6912-457b-9547-3a5b1613f324 genome assembly, chromosome: 4.
OY771905.1:1805909-1805923
CCTGGAACAGCTGCGGCGCAAGCCACTAAA1805909AATGTTGTCAATGAAAGCGTAAACTATTTCCGAAACCGTAAGGAC
Candidatus Auribacterota bacterium isolate 3f4a19dc-99c9-43a0-a9f8-0f63e283074a genome assembly, chromosome: 1.
OY776532.1:791251-791265
TGCCAGGGATGCTATATGAAATTAACGCCT791251AATGTTGTCAATGAAGTACACAAAGCTCACCAACTCATTTGCTGT
uncultured Bacteroides sp. isolate 6ee9dad5-58b7-45b3-ae34-dd463fe56e9c genome assembly, chromosome: 1.
OY780936.1:3936664-3936678
TCTGATCCACCTTTAGCACCACCCATTGGT3936664AATGTTGTCAATGAATTCTTGAATGTTTGTTCGAATGCTAAGAAT
Candidatus Brocadia pituitae DNA, complete genome.
AP021856.1:2668524-2668538
ATATTCTTTGCCAGGATTAACAGGAACGAT2668524TTCATTGACAACATTTATACATTCATTACCTGGTTAAGCACGGCT
Metapenaeopsis lamellata majanivirus Hokkoku2021 DNA, complete genome.
AP027153.1:124723-124737
ATTATTGGTACTTCCTCAATATTTTTTTTG124723TTCATTGACAACATTTGTATGTTTTTATCCATTACATTATCTTTT
MAG: Candidatus Parvibacillus calidus isolate SSA7 chromosome.
CP058702.1:1416200-1416214
TTCCTTTTTGAGGTAAATCTCAGCAATACT1416200TTCATTGACAACATTCACTTNTTTGATATCACCTGCTTCTGTGTA
MAG: Nitrospira sp. isolate DJ chromosome.
CP058931.1:728121-728135
GGATTGCTGCACCATATGCCTATCGACCGA728121TTCATTGACAACATTTTCAACTTCCCGACTCTCGCCGAAACCTAC
MAG: Paracoccaceae bacterium isolate SSD4 chromosome, complete genome.
CP059263.1:1442910-1442924
TGGTGATGACCCGTCTCGGTCAGCTTCGGT1442910TTCATTGACAACATTTCCTTTCAACAAAAATAAAAAATCCCGCCT
MAG: bacterium isolate Aved_18-Q3-R54-62_BAT3C.16_uni chromosome, complete genome.
CP064960.1:1186415-1186429
TTCCGCGATCAAGGCCGTGATGTTTTGCTC1186415TTCATTGACAACATTTTCCGCTTTACCCAGGCGGGCTCGGAAGTG
MAG: Dehalococcoidia bacterium isolate bin423 chromosome.
CP070729.1:1158274-1158288
TTCTACTTTTATTAATCTCTCCTTTTCATC1158274TTCATTGACAACATTGTAGCAATCACGACGGTGCACAGTTATTCC
MAG: Planctomycetota bacterium isolate bin1080 chromosome.
CP070830.1:1864778-1864792
AGCGCTTTTGCCCTTCCGTATCGCTGTAAC1864778TTCATTGACAACATTTACAAAACCCGTCTCCGGCTCGACAACAAC
MAG: Chryseotalea sp. WA131a chromosome, complete genome.
CP073016.1:158792-158806
TTCATTAGTCAGTCGTGCGGTGGGGCATTT158792TTCATTGACAACATTTTCCACTTACACGACACTGAGCACACTCTT
MAG: Cyclobacteriaceae bacterium isolate TGS_BAC11 chromosome.
CP075525.1:3028633-3028647
CTGATCAACGCCAGCGAACGGCAGCGCGCA3028633TTCATTGACAACATTAAGCGTGACACCGAAGCACAGGAAGGCGCG
MAG: Oscillospiraceae bacterium isolate KR001_HIC_0044 chromosome, complete genome.
CP107214.1:1759907-1759921
TTTTCTTTTATGGAAAAGTTCACCATAATT1759907TTCATTGACAACATTATCCAAGTCCAAACAAAACTCTGTTGTCAG
MAG: Ferroplasma sp. isolate BR_04 chromosome, complete genome.
CP133597.1:1482829-1482843
ATCGCTGAGCTGCCCCAGCATCCTGCCCTT1482829TTCATTGACAACATTATAATTAGCCTCTTCTGGAATTGTTCCCAC
Uncultured Flavobacteriia bacterium.
FO117603.1:16462-16476
AGTTAATGGCATTGGTTACTGGGTTAATAT16462TTCATTGACAACATTCTCACAAATACCTGATAATGAGAATATAAA
Uncultured bacterium clone VISS18_097 genomic sequence, sequence.
KX158548.1:16462-16476
AGTTAATGGCATTGGTTACTGGGTTAATAT16462TTCATTGACAACATTCTCACAAATACCTGATAATGAGAATATAAA
MAG: Homavirus sp. clone Homavirus_44 genomic sequence.
MK072375.1:2043-2057
ACGATTAGGTGCGGCATTAAGAAAAAACAG2043TTCATTGACAACATTGGATTTGGAAGATAATTACTTCAATAGTGA
MAG: Caudoviricetes sp. isolate 87, complete genome.
MN855792.1:19506-19520
CTTTCCGGGCAAGACTTTACTAAGCTTGAC19506TTCATTGACAACATTGAAGCCGCTTTTGTTGATTCCGATTCGGAT
MAG: Bacteriophage sp. isolate 1365_125971, partial genome.
OP030941.1:31585-31599
TATCTTTAACTGCCATTGTACCTATATTAT31585TTCATTGACAACATTCTAACTTCTCTAATTTCTGTGACAACAGGA
Bryobacterales bacterium isolate d47adfd7-a82f-4c56-911c-b237267f53ff genome assembly, chromosome: 1.
OY729422.1:566789-566803
CGCGATGTCGAGGGACAGGACACGCTGCTG566789TTCATTGACAACATTTTTCGCTTTACCCAGGCGGGTTCGGAAGTT
uncultured Saccharicrinis sp. isolate 6d264618-48f0-4bb8-a3a8-b07b6cea3acc genome assembly, chromosome: 2.
OY760421.1:2287247-2287261
ACTATATACCTGATTCTCTAACTTTAAAAT2287247TTCATTGACAACATTATTTCTTTCAACTTCAGACTTAACTACACT
Bacteroidales bacterium isolate 6bac1f82-7b85-4efe-bce6-6a357ed6c494 genome assembly, chromosome: 2.
OY760434.1:5236828-5236842
GTTATCTGATGGCACAAAGGTTTATTTAAA5236828TTCATTGACAACATTAAGCTATCCTGTTCAATTTGATTCCAAAAT
uncultured Saccharicrinis sp. isolate b24d65bc-b787-4b08-bcc3-89705e2e545e genome assembly, chromosome: 1.
OY760657.1:591681-591695
ACTATATACCTGATTCTCTAACTTTAAAAT591681TTCATTGACAACATTATTTCTTTCAACTTCAGACTTAACTACACT
Caldilineaceae bacterium isolate 2dea1185-ec07-45c3-aea1-90064fdeb666 genome assembly, chromosome: 209.
OY761382.1:11997-12011
TTCCGGGATGAAGGGCGGGACGTCCTGCTG11997TTCATTGACAACATTTTCCGCTTTGTGCAGGCAGGCGCGGAAGTG
Desulfatiglandales bacterium isolate d5234fa8-f814-4557-af24-a28d4dae9633 genome assembly, chromosome: 4.
OY761470.1:988368-988382
CCGGAGAAGTTCCAACCTTTTGGCGATCAA988368TTCATTGACAACATTATAATAGCTCAGCACATCGGCCATGCCATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj134env/AATGTTGTCAATGAA
lang : ja | db : ddbj134env | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.283 | 0.274 | search_plus_done; http://172.18.8.136:50412/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.476 | 0.193 | search_minus_done; http://172.18.8.136:50412/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=23
0.492 | 0.016 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).