GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-24 22:50:29, GGGenome : DDBJ release 134.0, GSS division (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus molossinus DNA, clone:MSMg01-307K04.T7, genomic survey sequence.
AG431939.1:558-572
TTAAACATCAGAGAAATGAAAAATAAGTAA558AATGTTGTCAATGAATAAACATCCCTGTAAGTTAAGGTTTGCAAT
Drosophila auraria DNA, clone: DAB1-008N14.R.fa, genomic survey sequence.
AG913287.1:240-254
AAAAGAAGAAAAACGCACATAGAACATCCA240AATGTTGTCAATGAAACTATAAAAGCTTGGGAAGAATTGCTCGGT
Tetraodon nigroviridis genome survey sequence T3 end of clone 011K22 of library A from Tetraodon nigroviridis.
AL311421.1:438-452
ACATTAGGAGGCACTCGAGATTTATGGACA438AATGTTGTCAATGAATAAAGCTAGTTTGCAGCTAGCCAATTAAAT
T3 end of clone XAT0AA001B07 of library XAT0AA from strain CBS 4311 of Saccharomyces servazzii.
AL404575.1:690-704
TCCATTATACAATTACAACAACACTTTGAA690AATGTTGTCAATGAATCAATAATTTCTAGAGAATCGCCTGTCCCA
Entamoeba invadens IP1 GSS, clone inv048a06.q1k.
AM614375.1:111-125
CTAACTCAACGCGATGTTGGAGAAGAGTAC111AATGTTGTCAATGAAAAGACATCAACTCCTGATGTTCAAGAACTT
Entamoeba terrapinae GSS, clone terra147d07.q1k.
AM686131.1:104-118
AATTGTTCAATGTGAGTGAGAAATGAAGTG104AATGTTGTCAATGAAGTAATTGTTACACTATTGCTACTTCTAAAT
HS_3021_B1_H06_MR CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=3021 Col=11 Row=P, genomic survey sequence.
AQ294605.1:78-92
AATTTGAATATTAATTTTAAAATTTATTCA78AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
HS_2145_A2_B12_T7C CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2145 Col=24 Row=C, genomic survey sequence.
AQ675783.1:172-186
GCCTGTTTTTCATATGCATATGTAATAGGG172AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
344P6.TV CIT978SKA1 Homo sapiens genomic clone A-344P06, genomic survey sequence.
B15385.1:494-508
CTTTTCTCTATTCACTGTCCTCAATGCTAG494AATGTTGTCAATGAACAAGACATATCTATGTTCCAGGACACTCAA
AG-ND-146M23.TR ND-TAM Anopheles gambiae genomic clone AG-ND-146M23, genomic survey sequence.
BH367335.1:535-549
AGCTTTTTCTATAAGAGCCTTTGAGACATT535AATGTTGTCAATGAAATCTATCCACCCAAAGCGTACTTTGTGAAT
AG-ND-168J19.TR ND-TAM Anopheles gambiae genomic clone AG-ND-168J19, genomic survey sequence.
BH393459.1:530-544
AGCTTTTTCTATAAGAGCCTTTGAGACATT530AATGTTGTCAATGAAATCTATCCACCCAAAGCGTACTTTGTGAAT
BOHGT31TR BOHG Brassica oleracea genomic clone BOHGT31, genomic survey sequence.
BH494989.1:525-539
AAGAACAGAGCTCACCTGAGTGAAACGGAA525AATGTTGTCAATGAAAAGCAACACATCTTGGCCTTCGGCATCACG
BOGRV85TF BOGR Brassica oleracea genomic clone BOGRV85, genomic survey sequence.
BH503563.1:66-80
TTGGCATTTATAAATAAGTTTTTCAACCCA66AATGTTGTCAATGAACGATATGATTTTTTACTTTTAAGTAGTTAT
BOGKB24TF BOGK Brassica oleracea genomic clone BOGKB24, genomic survey sequence.
BH533301.1:217-231
AAGAACAGAGCTCACCTGAGTGAAACGGAA217AATGTTGTCAATGAAAAGCAACACATCTTGGCCTTCGGCATCACG
BOGOW65TF BOGO Brassica oleracea genomic clone BOGOW65, genomic survey sequence.
BH601806.1:621-635
TTGGCATTTATAAATAAGTTTTTCAACCCA621AATGTTGTCAATGAACGATATGATTTTTTACTTTTAAGTAGTTAT
EINAK47TF EI_10_12_KB Entamoeba invadens genomic clone EINAK47, genomic survey sequence.
BZ395635.1:396-410
CTAACTCAACGCGATGTTGGAGAAGAGTAC396AATGTTGTCAATGAAAAGACATCAACTCCTGATGTTCAAGAACTT
PUDAU90TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa145O11, genomic survey sequence.
BZ721669.1:219-233
ATGCTCCTGTTGACTCTTGGAGTAGATGAG219AATGTTGTCAATGAAGACTACGACAAACTTATCTAACTCTTCCAT
PUGDZ12TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa362B24, genomic survey sequence.
BZ995430.1:387-401
AGAGAGAAGGCTTCCATTCAAGAGTTGATG387AATGTTGTCAATGAAATGATGTGGAACACAGAATTTGGTATTAGG
PUHRC85TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa515O01, genomic survey sequence.
CC410916.1:818-832
AGAGAGAAGGCTTCCATTCAAGAGTTGATG818AATGTTGTCAATGAAATGATGTGGAACACAGAATTTGGTATTAGG
ZMMBBc0326B15r ZMMBBc Zea mays subsp. mays genomic clone ZMMBBc0326B15 3', genomic survey sequence.
CC449881.1:464-478
AATGAATATATATATATATATATATATGCA464AATGTTGTCAATGAAAGTTCGCGTAGACCTGTTTCTAAAAGGAAG
ZMMBBc0425C24r ZMMBBc Zea mays subsp. mays genomic clone ZMMBBc0425C24 3', genomic survey sequence.
CC776526.1:638-652
ATGCTCTTCTTTATTCTTGGAATATATTAG638AATGTTGTCAATGAACACTACCACAAACCTGTCCAGTTTGGGCAT
NDL.62M2.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NotreDame Liverpool-62M2, genomic survey sequence.
CC871111.1:532-546
CTTTTTAGCACCTTTTGGTTTCATCCTGTA532AATGTTGTCAATGAAAACATCGATTAGTTATTATTTTTTGATCAA
tigr-gss-dog-17000324404511 Dog Library Canis lupus familiaris genomic, genomic survey sequence.
CE077734.1:340-354
CTCACAATTGGAGAGAGAAGATAAGGGATA340AATGTTGTCAATGAAAAATAGATTTCAAAGGAAAAAATCATAGTT
tigr-gss-dog-17000334252751 Dog Library Canis lupus familiaris genomic, genomic survey sequence.
CE384193.1:238-252
TTTTTTCTTAGTTGGCACGATTGGAAAGCA238AATGTTGTCAATGAACTGCACTGTTGCAGTGTTATTTTTGATTAT
tigr-gss-dog-17000362930872 Dog Library Canis lupus familiaris genomic, genomic survey sequence.
CE429786.1:223-237
TTAATATTAATATTAAATGGATGCCCACAG223AATGTTGTCAATGAAAATCTGTGTTTAAAGTGATAATATATTCTA
PUIBO59TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0546I21, genomic survey sequence.
CG051482.1:209-223
ATGCTCCTTTTCATTTTTGGAATAGATCAG209AATGTTGTCAATGAAGACCACCACAAATTTATCCAACTCGGGCAT
PUFZQ50TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0769J03, genomic survey sequence.
CG169385.1:697-711
ATGCTCCTGTTGACTCTTGGAGTAGATGAG697AATGTTGTCAATGAAGACTACGACAAACTTATCTAACTCTTCCAT
OG5BP44TC ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0825G16, genomic survey sequence.
CG322295.1:368-382
AGAGAGAAGGCTTCCATTCAAGAGTTGATG368AATGTTGTCAATGAAATGATGTGGAACACGGAATTTGCTATTAGG
abf93e07.y1 Soybean random, unfiltered genomic library Glycine max genomic, genomic survey sequence.
CL888916.1:34-48
TCCATAGTTTCCGTCAGCTTTGACATCCAC34AATGTTGTCAATGAAATCGTGGATAAATGGCTGAATTGATCCAAC
OsIFSB000177 Oryza sativa Express Library Oryza sativa Indica Group genomic, genomic survey sequence.
CL947655.1:1798-1812
GATAATGGAAACCTAACGCAGGAAGTGAAA1798AATGTTGTCAATGAAGAGAGCACTACACCTAAATTAGATAGATCT
OsIFCC006041 Oryza sativa Express Library Oryza sativa Indica Group genomic, genomic survey sequence.
CL961345.1:1636-1650
CATTCATGTCAGAACAGTCATCAAAGTGGC1636AATGTTGTCAATGAAGAGTCCAAAAATAAACAACTATTGGGATCA
GR0AAA37BB12RM1 INRA BAC Bos taurus genomic clone INRAb_619G11, DNA sequence.
CR812930.1:236-250
GCTGGTAGTGGATGAGGTCACACAAAAAGG236AATGTTGTCAATGAAAGCCAAGAAAACAAACATTAAGAACTTCTA
mth4-12M8RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula, genomic survey sequence.
CR963101.1:507-521
ACTATAGAGAAACAAGTATAACAAACAGAC507AATGTTGTCAATGAAAATATCTTACCCTCCAAGTTGTTGCCAATA
OA_ABa0171C22.f OA_ABa Oryza australiensis genomic clone OA_ABa0171C22 5', genomic survey sequence.
CW636337.1:407-421
CAGAGCTATCTGTGAATTGTTTAGTATTAT407AATGTTGTCAATGAACAAAAATGATTTGTATGGCCGCATTTGCAC
OP__Ba0071L07.f OP__Ba Oryza punctata genomic clone OP__Ba0071L07 5', genomic survey sequence.
CW750228.1:279-293
CTTCACTCTTCACTCGTCACTCGTTTAGTT279AATGTTGTCAATGAAGTTATAATTAGTTTGACCATCATTTGAAAG
OA_BBa0052F15.f OA_BBa Oryza alta genomic clone OA_BBa0052F15 5', genomic survey sequence.
CW994763.1:265-279
ATCTTCTCTTCACTCTTCACTCGTTTAGTT265AATGTTGTCAATGAATTTATAATTAGTTTGACCATCATTTGAAAG
LQCYD27TV American Alligator BAC Library Alligator mississippiensis genomic, genomic survey sequence.
CZ253759.1:10-24
CATAGTCTT10AATGTTGTCAATGAAAACTAGCATTTTTACATTCTAGGATTAGCA
SRAA-aac67a11.b1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.
CZ530453.1:111-125
TACTTCAGAACCAGCTTGAGTGAAACGGAA111AATGTTGTCAATGAAAAGAAGTACATCTTGTCCTTCTTGATCACG
OM__Ba0138G21.f OM__Ba Oryza minuta genomic clone OM__Ba0138G21 5', genomic survey sequence.
CZ611551.1:338-352
ATCTTCTCTTCACTCTTCACTCGTTTAGTT338AATGTTGTCAATGAATTTATAATTAGTTTGACCATCATTTGAAAG
OC__Ba0032C14.r OC__Ba Oryza coarctata genomic clone OC__Ba0032C14 3', genomic survey sequence.
CZ710728.1:337-351
ATCTTCTCTTCAGTCTTCACTCGTTTAGTT337AATGTTGTCAATGAATTTATAATTAGTTTGACCATCATCTGAAAG
OC__Ba0063N08.f OC__Ba Oryza coarctata genomic clone OC__Ba0063N08 5', genomic survey sequence.
CZ733130.1:541-555
TGTTTTGCTCTTCTAACTGTGATGTTTGCT541AATGTTGTCAATGAAGTTGGCTTTCAAAAAAATTTA
OC__Ba0145L20.f OC__Ba Oryza coarctata genomic clone OC__Ba0145L20 5', genomic survey sequence.
CZ783483.1:423-437
GAAGGAAAACAAAGAATTGTTAGGGTTAAC423AATGTTGTCAATGAAGGCGATTACAACAAGCATATCCATGTTATT
OC__Ba0146P16.r OC__Ba Oryza coarctata genomic clone OC__Ba0146P16 3', genomic survey sequence.
CZ784392.1:336-350
ATCTTCTCTTCAGTCTTCACTCGTTTAGTT336AATGTTGTCAATGAATTTATAATTAGTTTGACCATCATCTGAAAG
Bombyx mori genomic DNA, Fosmid clone:RO0290-K05_F.
DE150088.1:643-657
TCTGTGCAAGTCTTTAAACTTGTATGCTAC643AATGTTGTCAATGAAAAATTTAACAGAAATAGCGGAAACATTCGT
Bombyx mori genomic DNA, BAC clone:BET_074_D20.
DE353745.1:276-290
TCTATGTATCATTGTGTTAGTTCACTCCGT276AATGTTGTCAATGAAAAATTCTAAAGTAAATTTACTGAGATTTGT
Bombyx mori genomic DNA, BAC clone:18E10E.
DE397055.1:122-136
TCTGTGCAAGTCTTTAAACTTGTATGCTAC122AATGTTGTCAATGAAAAATTTAACAGAAATAGCGGAAACATTCGT
Bombyx mori genomic DNA, BAC clone:11A4F.
DE410762.1:94-108
TCCCCTCAAGTCTTTAAACTTGTATGCTAC94AATGTTGTCAATGAAAAATTTAACAGAAATAGCGGAAACATTCGT
Bombyx mori genomic DNA, BAC clone:13K8A.
DE413272.1:100-114
TCTCTGCAAGTCTTTAAACTTGTATGCTAC100AATGTTGTCAATGAAAAATTTAACAGAAATAGCGGAAACATTCGT
Bombyx mori genomic DNA, Fosmid clone:GBMFno75_p03.b1.
DE474432.1:256-270
TCTGTGCAAGTCTTTAAACTTGTATGCTAC256AATGTTGTCAATGAAAAATTTAACAGAAATAGCGGAAACATTCGT
Bombyx mori genomic DNA, Fosmid clone:GBMFno398_h18.g1.
DE646820.1:50-64
CAATAAAATATCTCGTATTATGATGACAGT50AATGTTGTCAATGAAATGGTAGTTTTAAACATAAATGTCGTTTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj134gss/AATGTTGTCAATGAA
lang : ja | db : ddbj134gss | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.491 | 0.482 | search_plus_done; http://172.18.8.136:50416/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.531 | 0.040 | search_minus_done; http://172.18.8.136:50416/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=0
0.531 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).