GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-22 04:18:42, GGGenome : DDBJ release 134.0, HTC division (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Solanum lycopersicum cDNA, clone: FC12CF10, HTC in fruit.
AK246898.1:376-390
GAGATCATTTACACAAGGACATGGCAAGAA376AATGTTGTCAATGAATTATTTTAGCTTAGAGTCAATTATTTTGTT
Toxoplasma gondii cDNA, clone: XTG01968.2, full cDNA, XTG Sugano cDNA library.
AK318469.1:973-987
TGTTTTGTGTAAGGATATCGGGTCTCTAGA973AATGTTGTCAATGAAGGAATGTCAGATGTGTTGGGCAGATGTTAT
Solanum lycopersicum cDNA, clone: LEFL1073CG06, HTC in leaf.
AK324205.1:754-768
GAGATCATTGACACAAGGACATGGCAAGAA754AATGTTGTCAATGAATTATTTTAGCTTAGAGTCAATTATTTTGTT
Solanum lycopersicum cDNA, clone: LEFL3161B10, HTC in root.
AK329925.1:150-164
GGTTCTAATCAACTCAAGTTTTGGAAAGAA150AATGTTGTCAATGAAATGCCTCCATCTCTTGTTTCTAAATTATCT
Oryza sativa (indica cultivar-group) clone OSE-193-288-F12 osiaa17-auxin-responsive aux/iaa gene family member mRNA, partial cds.
EF575864.1:506-520
TATGATTGAGCACCCCTACCTACTTTGCAA506AATGTTGTCAATGAACTGTTTGTTCGCTACATAAATGTTCAATGA
Aspergillus oryzae cDNA, contig sequence: AoEST3165.
AB226303.1:974-988
CGTGACGAGGAAGGTCAGGATGTGCTGCTC974TTCATTGACAACATTTTCCGGTTTCACCCAGGCCGGTTCTGAGGT
Papilio xuthus mRNA for ATP synthase-beta, partial cds, sequence id: Px-0449, expressed in epidermis.
AK402800.1:932-946
CGTGACCAGGAGGGTCAGGATGTGCTGCTC932TTCATTGACAACATTTTCCGTTTCACTCAAGCCGGTTCTGAAGTG
Cryptomeria japonica mRNA, clone: CSFL002_L12, expressed in reproductive shoots.
AK414516.1:1224-1238
ATCCAGTCCACAGACCATGGCTATAAATGG1224TTCATTGACAACATTGCTAAACGTCCTTCAAGTTCTTGGTATTAT
Armigeres subalbatus ASAP ID: 41997 hydrogen transporting two sector ATPase mRNA sequence.
AY441405.1:185-199
CGCGATCAAGAAGGACAGGATGTGCTGCTC185TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCTGGGGTA
Aedes aegypti clone AET-272 F0F1-type ATP synthase beta subunit mRNA, complete cds.
DQ440233.1:838-852
CGTGATCAGGAAGGACAGGATGTGCTGCTC838TTCATTGACAACATTTTCCGTTTCACCCAAGCTGGTTCTGAGGTA
Bombyx mori H+ transporting ATP synthase beta subunit isoform 1 mRNA, complete cds.
DQ443321.1:992-1006
CGTGATCAAGAAGGACAGGATGTACTGCTC992TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGATCAGAAGTG
Bombyx mori H+ transporting ATP synthase beta subunit isoform 2 mRNA, complete cds.
DQ443322.1:975-989
CGTGATCAAGAAGGACAGGATGTACTGCTC975TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGATCAGAAGTG
Hartaetosiga gracilis isolate ATCC 50964 pink-eyed dilution-like 1 mRNA, partial cds.
KU821761.1:1960-1974
GTCCTTTGGGTGTCCGCGATTGCATCTTCT1960TTCATTGACAACATTCCCTTCACCACTGCAATGATTCCTGTGATC
Stephanoeca diplocostata isolate ATCC PRA-392 pink-eyed dilution-like 2 mRNA, complete cds.
KU821781.1:2023-2037
GTGCTGTGGGTGTCGGCCATTGCGTCGTCC2023TTCATTGACAACATTCCGTTCACGGCTGCGATGATTCCCGTCATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj134htc/AATGTTGTCAATGAA
lang : ja | db : ddbj134htc | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.085 | 0.076 | search_plus_done; http://172.18.8.137:50417/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.094 | 0.009 | search_minus_done; http://172.18.8.137:50417/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.100 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).