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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2024-11-22 10:16:36, GGGenome : DDBJ release 134.0, ROD division (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus chromosome 10, clone RP23-179O14, complete sequence.
AC118198.7:210723-210737
TACAGAGATACAGGATGGTTACATATATGA210723AATGTTGTCAATGAAGTCCATCATATAAACAAACAGAAAGAAATA
Rattus norvegicus BAC CH230-273M4 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence.
AC120565.6:21441-21455
AATACAGGTAAAGGGCTGAACAATGCAAAA21441AATGTTGTCAATGAATTACTTAAAACTAAATGTAAATGGGAGAGG
Mus musculus 6 BAC RP23-265B8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence.
AC153574.4:84477-84491
ATCATGGTATCCACACAGAAGGCCCAGTTA84477AATGTTGTCAATGAAGTGATGACACAAACAGGGAGAATGTGTTCA
Mus musculus 10 BAC RP23-116E8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence.
AC153829.7:152005-152019
TACAGAGATACAGGATGGTTACATATATGA152005AATGTTGTCAATGAAGTCCATCATATAAACAAACAGAAAGAAATA
Mus musculus BAC clone RP23-399K3 from chromosome 14, complete sequence.
AC154574.2:107188-107202
TGGCTGCTGAGGTTGTCACTCTCAGTGGGC107188AATGTTGTCAATGAACACACCCTCCAGGGAGAGATTCCAGCAGCA
Mus musculus 6 BAC RP24-532I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence.
AC155835.3:114834-114848
TAACCAGCAGATGTTTATGGAAGAGTGAAC114834AATGTTGTCAATGAATGGATATATTTAGGAAACTGATAGTACTTT
Ictidomys tridecemlineatus clone VMRC20-719B8, complete sequence.
AC184040.3:67141-67155
CTTTTTTGTTTTATCTGCCATTTAAGTAAA67141AATGTTGTCAATGAATAAACAGTTACATTCTTTATAGGTTAAAGA
Mouse DNA sequence from clone RP23-211J18 on chromosome 2.
AL844531.6:20586-20600
ATATCTATTTATTCATTGATGTAGCTTTCA20586AATGTTGTCAATGAACACTGTTACTTCGTTGAGCACATGAAAAGT
Sciurus carolinensis genome assembly, chromosome: 2.
LR738591.1:104660492-104660506
TATTACATTTAACATTAACATTAATTTTTT104660492AATGTTGTCAATGAACCAGTGAGTTTAAGTTTCACTGATTAGATC
Sciurus carolinensis genome assembly, chromosome: 2.
LR738591.1:113570536-113570550
ATTCCAAAATAGAAAAGTGTACAGATCATA113570536AATGTTGTCAATGAATTATCACAAACTGAACACAACTTTGTAATT
Sciurus carolinensis genome assembly, chromosome: 6.
LR738595.1:86923588-86923602
GAACAGTGGAAAAGAGCTATGGATTATTTA86923588AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
Sciurus carolinensis genome assembly, chromosome: 7.
LR738596.1:86319871-86319885
GTCTGGGAAAGAGTGGGGTGGCGTGAAGGG86319871AATGTTGTCAATGAACCTAATTCAGGACAGGAGCTCTGGCCCTAA
Sciurus carolinensis genome assembly, chromosome: 8.
LR738597.1:61647843-61647857
TATGTGATTTTGCTACGTAAAATTTTCATA61647843AATGTTGTCAATGAATGAAGTTAGTTCAACATTGTGGACAGTCTC
Sciurus carolinensis genome assembly, chromosome: 8.
LR738597.1:112488110-112488124
CTAATACACCTGCATGTATACATTACCTTT112488110AATGTTGTCAATGAATGAATTACAAGTAGAGGTAAGAGGTAATAT
Sciurus carolinensis genome assembly, chromosome: 9.
LR738598.1:132542740-132542754
CTTTGTGAGGTGGGTCATATTGTGGGCTTC132542740AATGTTGTCAATGAAGATACTCAAGCTTGCCCTTGTCTTGCTCCC
Sciurus carolinensis genome assembly, chromosome: 10.
LR738599.1:18548532-18548546
GACAGAATGCCATCAACAATATTAAGACAT18548532AATGTTGTCAATGAATGTGTCTGCTTTGGAGGATGGAAAAATAAT
Sciurus carolinensis genome assembly, chromosome: 10.
LR738599.1:37473255-37473269
CTAGAACGTATCAAAGTGATATTGTATATG37473255AATGTTGTCAATGAAGTGCATAAGGTTGTTTTTTTCACATCCAAA
Sciurus carolinensis genome assembly, chromosome: 10.
LR738599.1:82833775-82833789
GGTACAAGAGGAATGTAGTCAACAAAATTA82833775AATGTTGTCAATGAAACATGTTAGGACATGTTTCACTGACATATA
Sciurus carolinensis genome assembly, chromosome: 11.
LR738600.1:62316103-62316117
AAGATTACCTGCCTATACTGTCCCTCACAG62316103AATGTTGTCAATGAAGCACCATCTAAGCAGATGGGAGCTGCTAAT
Sciurus carolinensis genome assembly, chromosome: X.
LR738601.1:81641247-81641261
TGTAGAAATGGGAAAACTGATCTTAAAATT81641247AATGTTGTCAATGAATTTGAAACATCTAAAATACTTAAAGAAAAA
Sciurus vulgaris genome assembly, chromosome: 1.
LR738611.1:146461571-146461585
AAAAATTAGGACTAGAAAGGCTTACAATGA146461571AATGTTGTCAATGAAACGCAAAAGAAGACGAACAAGCAGTGTAAT
Sciurus vulgaris genome assembly, chromosome: 2.
LR738612.1:94170005-94170019
CATCTGCCTAAAGGGAACTGTTCCTCCCAA94170005AATGTTGTCAATGAAGCACCTCCTGGATGGCTCTTTTCCTGCCTG
Sciurus vulgaris genome assembly, chromosome: 2.
LR738612.1:185523486-185523500
GACCATGCTCTTTCAAAACTTCCACTTTTT185523486AATGTTGTCAATGAAAAGTACAGGCAGGCAGGATGCTCATTTCAA
Sciurus vulgaris genome assembly, chromosome: 4.
LR738614.1:147431427-147431441
AGCTAAAATTTTCTACATTTATTAACTATT147431427AATGTTGTCAATGAATGATGATTTTATGTTAGATTTCATAATTTC
Sciurus vulgaris genome assembly, chromosome: 7.
LR738617.1:87958862-87958876
GTCTGGGAAAGAGTGGGGTGGCGTGAAGGG87958862AATGTTGTCAATGAACCTAATTCAGGACAGGAGCTCTGGCCCTAA
Sciurus vulgaris genome assembly, chromosome: 8.
LR738618.1:62819367-62819381
TATGTGATTTTGCTACATAAAATTTTCATA62819367AATGTTGTCAATGAATGAAGTTAGTTCAACATTGTGGACAGTCTC
Sciurus vulgaris genome assembly, chromosome: 9.
LR738619.1:20851972-20851986
GACAGAATGCCATCAACAGTATTAAGACAT20851972AATGTTGTCAATGAATGTGTCTGCTTTGGAGGGTGGAAAAATAAT
Sciurus vulgaris genome assembly, chromosome: 9.
LR738619.1:87376822-87376836
GGTACAAGAGGAATTTAGTCAACAAAATTA87376822AATGTTGTCAATGAAACATGTTAGAACATGTTTCACTGACATATA
Sciurus vulgaris genome assembly, chromosome: 10.
LR738620.1:30071664-30071678
ATTATAGAATAAAATTAATGGCTCACAATG30071664AATGTTGTCAATGAAATAGAATATGTTATGTTGACCATTAGAGAG
Sciurus vulgaris genome assembly, chromosome: 11.
LR738622.1:57779194-57779208
AAGATTACCTGCCTATACTGTCCCTCCCAG57779194AATGTTGTCAATGAAGCACCTTCTAAGCAGATGGGAGTTGCTAAT
Sciurus vulgaris genome assembly, chromosome: 13.
LR738624.1:13422939-13422953
CAAAGGAAAATAATTGTTGAATCACAGGTC13422939AATGTTGTCAATGAACGTAGGTGAGGAAGTGTTTGACAATGCAAG
Sciurus vulgaris genome assembly, chromosome: 15.
LR738626.1:26152604-26152618
CCAAAGCCATTGAAAATAGAATTTTTTTTT26152604AATGTTGTCAATGAAGTTAAATATATCCCATTTTAAAATTTTAAC
Arvicola amphibius genome assembly, chromosome: 2.
LR862381.2:168981327-168981341
GTTTATTTTATCAAAGTCAGAAATTACTTT168981327AATGTTGTCAATGAATTGTAGAGTGGATTTCGCATTTTTATTATA
Arvicola amphibius genome assembly, chromosome: 3.
LR862382.1:7997410-7997424
ATCTATTTAAGGGATACAGAATAAAACTTG7997410AATGTTGTCAATGAAATTTTTTATGGTATTAAGACTCATCGTTTC
Arvicola amphibius genome assembly, chromosome: 4.
LR862383.1:100969433-100969447
TCAATAAAATGCCTCATTTTTTTCAATAAT100969433AATGTTGTCAATGAAGTCATTAAAATCTTTTTTTTGTTCATTTGG
Arvicola amphibius genome assembly, chromosome: 5.
LR862384.1:90186727-90186741
ATTTGGATGCCCTCCCTATGCCATGACCCT90186727AATGTTGTCAATGAAGACTACAACAAGAAACACTTCAGTAGTCAC
Arvicola amphibius genome assembly, chromosome: 10.
LR862390.1:108309406-108309420
AAACCCCAAATGGCACTGGCAACAACTGAG108309406AATGTTGTCAATGAAAACCTGTACAAAGCATCCTGTTTTCAAGTT
Onychomys torridus genome assembly, chromosome: 2.
LR877189.1:95011773-95011787
GAGTGGTGCATGTAGCTCCCTTCTGATTCC95011773AATGTTGTCAATGAAAGAACAGTAGAAACAGCCCTTTCATTATTT
Onychomys torridus genome assembly, chromosome: 3.
LR877190.1:93584975-93584989
AGAATTTCTCAAAGTCAAAATACAAAATGA93584975AATGTTGTCAATGAATATTCCCCAGCTCATAAAAAAAAATGGCAT
Onychomys torridus genome assembly, chromosome: 8.
LR877195.1:44603130-44603144
AGGAAGATATTAGAGCATATGAAAGAGATG44603130AATGTTGTCAATGAAAATATACTGAGTAATTTATAACCTAATAGA
Onychomys torridus genome assembly, chromosome: 9.
LR877196.1:48031236-48031250
GAAGGGAGCTTTGCAGCGCACTTTTAAAAT48031236AATGTTGTCAATGAAATAAAGTTTCAGAGTGTGCATTTTATTTCT
Onychomys torridus genome assembly, chromosome: 20.
LR877207.1:35967287-35967301
TGATAAGCATTGCATCCCTATACAAAGAAA35967287AATGTTGTCAATGAAACGACAATCCAGTGTTTCTCTTCTTTTGGG
Onychomys torridus genome assembly, chromosome: 23.
LR877210.1:13438630-13438644
GAGCAGTGGAAACGAGCCATGGATTATTTA13438630AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
Onychomys torridus genome assembly, chromosome: X.
LR877211.1:52151024-52151038
CAAGTTCATGTTGTTATTTAGCCCATCTCT52151024AATGTTGTCAATGAAAACACTTAAGTGTTTTCATTTTGAAAGTTT
Acomys russatus genome assembly, chromosome: 11.
LR877222.1:49902692-49902706
TGTGATAGTTTCTGATTTAAAAAAAAAAAA49902692AATGTTGTCAATGAAACACAAGCCAGCAGTCCAATACTCCTGAAA
Acomys russatus genome assembly, chromosome: 15.
LR877226.1:36346690-36346704
GTGTTTACCAAGACTTTGCAACTTCTTCCA36346690AATGTTGTCAATGAAAAAAAAAAAAAAGGCAGTTGCTAGGAGGCC
Acomys russatus genome assembly, chromosome: 28.
LR877239.1:5979813-5979827
TACAAATATCTTGACTTTATTGGAGCTGTT5979813AATGTTGTCAATGAAAGAGACCATGGCTATTGCACTATTAGGCCC
Acomys kempi genome assembly, chromosome: 2.
OU015356.1:11927739-11927753
CTTAGTCCACCTTAGTCTTTGAAAGCAAAA11927739AATGTTGTCAATGAAAGTTTTTATCAGACTGAAATCTCTCAGTAA
Acomys kempi genome assembly, chromosome: 6.
OU015360.1:38821914-38821928
AAGAGAATATTTCAGGTTAAAGGCATAAGA38821914AATGTTGTCAATGAATTTTTTAAAAAACACAAGTCTTATGAAAGA
Acomys kempi genome assembly, chromosome: 8.
OU015362.1:111342870-111342884
TGCCGGTGACCTAACCCAACTTCACGTGTC111342870AATGTTGTCAATGAAAACAATCCAAGTTCACACTTTACCTATATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj134rod/AATGTTGTCAATGAA
lang : ja | db : ddbj134rod | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.088 | 0.080 | search_plus_done; http://172.18.8.136:50403/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.124 | 0.036 | search_minus_done; http://172.18.8.136:50403/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=0
0.124 | 0.000 | cgi_end;

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