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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 10:10:09, GGGenome : DDBJ release 134.0, ROD division (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rattus norvegicus Mcs BAC CH230-1A1 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence.
AC091242.12:72597-72611
TGAATGAAAGGTCAGAGTTCAAGGTGTGAT72597TTCATTGACAACATTAAATATTTACTGAATCTTAAATCTTATCCT
Rattus norvegicus Mcs1 CH230-3I8 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence.
AC094490.9:77809-77823
TGAATGAAAGGTCAGAGTTCAAGGTGTGAT77809TTCATTGACAACATTAAATATTTACTGAATCTTAAATCTTATCCT
Mus musculus chromosome 3, clone RP23-341B15, complete sequence.
AC102806.18:103943-103957
ATTGCAAACCTTAACTTACAGGGATGTTTA103943TTCATTGACAACATTTTACTTATTTTTCATTTCTCTGATGTTTAA
Mus musculus chromosome 3, clone RP23-49O22, complete sequence.
AC107701.8:76582-76596
TAGATTCTGCCTCAGAACTTGTAGTTGAAG76582TTCATTGACAACATTGGTCAACATGCAGCTTGAATCTGGGGCAAC
Mus musculus chromosome 5, clone RP23-330E5, complete sequence.
AC118200.8:51451-51465
TAGAATCAGTGTAAGCCATCCCTACACTTA51451TTCATTGACAACATTCATGCAATCTTCAGTGTTCATTACTTTGCT
Mus musculus BAC clone RP23-109J14 from 1, complete sequence.
AC125216.3:133794-133808
GAATACTTAATGTACCATTTGGAAACACTG133794TTCATTGACAACATTTTATTTGCTATTTCCTGCTGTCTTTAAAAA
Rattus norvegicus CH230-12L9 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence.
AC132498.4:110866-110880
CCTCTCCCATTTACATTTAGTTTTAAGTAA110866TTCATTGACAACATTTTTTGCATTGTTCAGCCCTTTACCTGTATT
Mus musculus BAC clone RP24-159A20 from chromosome 5, complete sequence.
AC152165.2:163547-163561
GTCAACATGTACTTTAAACTTTAGTAATGT163547TTCATTGACAACATTGATGCTTTTGGCTTGGGGGCATGGATGCTA
Mus musculus 6 BAC RP23-387H1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence.
AC158660.4:195953-195967
AAAGTACTATCAGTTTCCTAAATATATCCA195953TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA
Mouse DNA sequence from clone RP23-307O24 on chromosome 2.
AL831781.8:102647-102661
AGACAAATTAAGACTGTATTGTATCATGGT102647TTCATTGACAACATTTAAAATTGTTACATATTTCAAAATTTTTTA
Mouse DNA sequence from clone CH29-502J5 on chromosome 6.
CU207317.13:16788-16802
TGAACACATTCTCCCTGTTTGTGTCATCAC16788TTCATTGACAACATTTAACTGGGCCTTCTGTGTGGATACCATGAT
Sciurus carolinensis genome assembly, chromosome: 1.
LR738590.1:65607828-65607842
ATTACACTGCCTGTTCGTCTTCTTTTGCAT65607828TTCATTGACAACATTTCATTGTAAGCCTTTCTAGTCCTAAGTTTT
Sciurus carolinensis genome assembly, chromosome: 2.
LR738591.1:107693935-107693949
CGGGCAGGAAAAGAGCCATCCAGGAGGTGC107693935TTCATTGACAACATTTTGGGAGGAACAGTTCCCTTTAGGCAGATG
Sciurus carolinensis genome assembly, chromosome: 3.
LR738592.1:128834629-128834643
AACTAGTGAATTGATAATGCTGATTTTTTT128834629TTCATTGACAACATTATAAAATATAGAAGATAAATAAGTACTTTT
Sciurus carolinensis genome assembly, chromosome: 4.
LR738593.1:71137194-71137208
GTGATTTATTCATTCTGATTTGAATTTTCA71137194TTCATTGACAACATTTCTTAGAAAGGGGGCACATACCAGTAGGAA
Sciurus carolinensis genome assembly, chromosome: 4.
LR738593.1:134650461-134650475
TGGATAATCTCTAGGCTCATTAGGAAGATG134650461TTCATTGACAACATTCTAGGAATTGCTGATCTAAATCATCTTTGC
Sciurus carolinensis genome assembly, chromosome: 4.
LR738593.1:135868885-135868899
CTGAGCTCACACCAAGGTCCTATGATGAGC135868885TTCATTGACAACATTCTAAGGCTTCTCTAGCCTATGTCTCCAAAG
Sciurus carolinensis genome assembly, chromosome: 5.
LR738594.1:39341201-39341215
AAATTATGAAATCTAACATAAAAATCATCA39341201TTCATTGACAACATTAATAGTTAATAAATGTAGAAAATTTTACTC
Sciurus carolinensis genome assembly, chromosome: 6.
LR738595.1:80796469-80796483
GAATCAAAGGTCAAAATTTAAAGAAATGAT80796469TTCATTGACAACATTAAATATTTACTGAATCTCAACTTTTTCCTG
Sciurus carolinensis genome assembly, chromosome: 8.
LR738597.1:35470775-35470789
CTCTTTACCTTATAAGAATGTAGCCTCTTT35470775TTCATTGACAACATTTTTACTTAAATGGCAGAAAGATCAAGAGGG
Sciurus carolinensis genome assembly, chromosome: 9.
LR738598.1:17116716-17116730
CCATTTATATTAATTTCTAAGCTTATTTTA17116716TTCATTGACAACATTTAAGTTACTGTAGGACTTAGAGTGCAGTAC
Sciurus carolinensis genome assembly, chromosome: 9.
LR738598.1:112299787-112299801
CTCTCTAATGGTCAACATAACATATTCAAT112299787TTCATTGACAACATTCATTATGGGCCATTAATTTTATTCTATAAT
Sciurus carolinensis genome assembly, chromosome: 10.
LR738599.1:123787557-123787571
GATGATAATATATTTACTTGATACCATATA123787557TTCATTGACAACATTCTTCTGTTATTTTTGGTTCGGAGAATACTT
Sciurus carolinensis genome assembly, chromosome: 11.
LR738600.1:60700667-60700681
TAGAATGTAATGTAACTGAAAGAAAAAGTT60700667TTCATTGACAACATTTATTGTTAATGTGCAGTTTATTTTTACTTT
Sciurus carolinensis genome assembly, chromosome: 14.
LR738604.1:62976319-62976333
GTTAAAATTTTAAAATGGGATATATTTAAT62976319TTCATTGACAACATTAAAAAAAATTCTATTTTCAATGGCTTTGGT
Sciurus carolinensis genome assembly, chromosome: 17.
LR738607.1:52110747-52110761
AGTATGCTGCACTCCAAATACCATTGTGTT52110747TTCATTGACAACATTCACTGTTACATATGCATATGAAAAACAGGC
Sciurus vulgaris genome assembly, chromosome: 1.
LR738611.1:198320633-198320647
TTCATTCAGTTGGTTAACACCTGAAGCACC198320633TTCATTGACAACATTGATATCCTAAGCTAGCCCTTGAAAGGCCAA
Sciurus vulgaris genome assembly, chromosome: 2.
LR738612.1:97198699-97198713
GATCTAATCAGTGAAACTTAAACTCACTGG97198699TTCATTGACAACATTAAAAGATTAATGTTAATGTTAAATGTAATA
Sciurus vulgaris genome assembly, chromosome: 5.
LR738615.1:137797406-137797420
TGGATCATTTCTAGGCTCATTAGGAAGATG137797406TTCATTGACAACATTCTAGGATTTGCTGAACTAAATCATCTTTGC
Sciurus vulgaris genome assembly, chromosome: 5.
LR738615.1:139109071-139109085
CTGAGCTCACACCAAGGTCCTATGATAAGC139109071TTCATTGACAACATTCTAAGACCTCTCTAGCCTGTGTCTCCAAAG
Sciurus vulgaris genome assembly, chromosome: 6.
LR738616.1:83507239-83507253
CATGATAACAATCTGAGTCATGTAGTTGAG83507239TTCATTGACAACATTTAAATAATCCATAGCTCTTTTCCACTGTTC
Sciurus vulgaris genome assembly, chromosome: 8.
LR738618.1:35938805-35938819
TCTTTACCTTATAAGAATGTAGCCTTTTTT35938805TTCATTGACAACATTTTTACTTAAATGGCAGAAAGATCAAGAGGG
Sciurus vulgaris genome assembly, chromosome: 9.
LR738619.1:84979856-84979870
AGTTTTCCCAATGAGCCAATAAGCTGTAGA84979856TTCATTGACAACATTAGCTGTGCTTATAAGCTCAATCTCTCTTTC
Sciurus vulgaris genome assembly, chromosome: 10.
LR738620.1:9263039-9263053
GGGAGCAAGACAAGGACAAGCTTGAGTATA9263039TTCATTGACAACATTGAAGCCTACAATACGACCCTCCTCACAAAG
Sciurus vulgaris genome assembly, chromosome: X.
LR738621.1:50873969-50873983
ACTTTCTTTAAGTATTTCACATATTTCAAA50873969TTCATTGACAACATTAATTTTAAGATCAGTTTTCCCATTTCTACA
Sciurus vulgaris genome assembly, chromosome: 11.
LR738622.1:56140488-56140502
TAGAATGTGATGTAACTGAAAGAAAAAGTT56140488TTCATTGACAACATTTATTGTTAATGGGCAGTTTATTTTTACTTT
Sciurus vulgaris genome assembly, chromosome: 16.
LR738627.1:48603204-48603218
AGTATGCTGCACTCCAAATACCATTGTGTT48603204TTCATTGACAACATTCATTATTACATATGCATATGAAAAACAGGC
Arvicola amphibius genome assembly, chromosome: 5.
LR862384.1:108296074-108296088
TGGGAAGAAGATAAGATTGGCTGAATGGAG108296074TTCATTGACAACATTCTTACTCTCATTTAGATAATAACCTGTCCC
Arvicola amphibius genome assembly, chromosome: 7.
LR862386.1:87019988-87020002
TGAGTAAAGCTGAATATCACTGGGGATTAT87019988TTCATTGACAACATTTATTATTAGTATTAGTATTATTAATATTAG
Onychomys torridus genome assembly, chromosome: 1.
LR877188.1:3758610-3758624
GTGAAACAGATATTTCCTCGGGATGAAGAA3758610TTCATTGACAACATTAGGTGAATAAGAGACAAAAAGCAGCTGTTC
Onychomys torridus genome assembly, chromosome: 1.
LR877188.1:52906274-52906288
GTAGGGCTGCACCCTGACTGAGGTCTTCTT52906274TTCATTGACAACATTTGTATTATTTAAAAGGGAAAAAAAAAGTCC
Onychomys torridus genome assembly, chromosome: 1.
LR877188.1:88464851-88464865
CAGTTGCCTACTTCACCACATCCTCATCTT88464851TTCATTGACAACATTTCCTCTCTTCAGGGAGCATTTTCATCTTTT
Onychomys torridus genome assembly, chromosome: 5.
LR877192.1:9078365-9078379
CAGCCATCTGGATGTGTTTAAATATAGAGA9078365TTCATTGACAACATTGGTTTCATTGACTGGATTTTAAAGACACGG
Onychomys torridus genome assembly, chromosome: 10.
LR877197.1:97821545-97821559
GGACCCAATAGTGCATTAGACACAGATTCT97821545TTCATTGACAACATTAATACCTGCAATAAAGTCAAGATATTGGCA
Onychomys torridus genome assembly, chromosome: 19.
LR877206.1:63665407-63665421
TAAAAAAATAACTTGAATCACCAAAAATTG63665407TTCATTGACAACATTCAACATTAATGGTCCCATTTCCCTATTAAA
Onychomys torridus genome assembly, chromosome: 19.
LR877206.1:63798970-63798984
TAAAAAAATAACTTGAATCACCAAACATTG63798970TTCATTGACAACATTCAACATTAACAGTCCCATTTCCCTATTAAA
Onychomys torridus genome assembly, chromosome: 23.
LR877210.1:18703988-18704002
TAAATCCATTCAATGTTAATGAAAATGCCT18703988TTCATTGACAACATTATAGAGAAGACCTAGAGATGAAGGGAAAAC
Acomys russatus genome assembly, chromosome: 2.
LR877213.1:87960872-87960886
ATGTTCAGTCTGTGGTCCCAATAGGCTGTG87960872TTCATTGACAACATTAGCACAACAGTGTCATGAGAGGGTTCCTCT
Acomys russatus genome assembly, chromosome: 4.
LR877215.1:81068078-81068092
GTATTTAAACTATATGTCTACAACTTTCTT81068078TTCATTGACAACATTATTTCCATTCATTGTAAATGCAGAAGTAAC
Acomys russatus genome assembly, chromosome: 8.
LR877219.1:8373139-8373153
CTTATTAGTTTTTAAAATTATTCTTAGATT8373139TTCATTGACAACATTTTTCCTTTAGTATAATTTTTACAAAAAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj134rod/TTCATTGACAACATT
lang : en | db : ddbj134rod | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.085 | search_plus_done; http://172.18.8.136:50403/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.132 | 0.039 | search_minus_done; http://172.18.8.136:50403/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=0
0.132 | 0.000 | cgi_end;

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