GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-05 23:06:40, GGGenome : DDBJ release 134.0, TSA division (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Artemisia annua strain Artemis Contig33880, mRNA sequence.
EZ174474.1:982-996
CACCTCAGAGTTAGCCTGGGTAAAACGGAA982AATGTTGTCAATGAAGAGAAGCACATCTTGTCCTTCAGCATCTCT
TSA: Artemisia annua strain Artemis Contig18543.Amlt mRNA sequence.
EZ251873.1:172-186
GACCTCAGAGTTGGCCTGGGTAAAACGGAA172AATGTTGTCAATGAAAAGGAGCACGTCTTGCCCTTCAGCATCTCT
TSA: Artemisia annua strain Madagascar Contig14450 mRNA sequence.
EZ271347.1:266-280
CACCTCAGAGTTAGCCTGGGTGAAACGGAA266AATGTTGTCAATGAAGAGAAGCACATCTTGTCCTTCGGCATCTCT
TSA: Artemisia annua strain Madagascar Contig13763, mRNA sequence.
EZ287376.1:392-406
CACCTCAGAGTTAGCCTGGGTGAAACGGAA392AATGTTGTCAATGAAGAGAAGCACATCTTGTCCTTCAGCATCTCT
TSA: Artemisia annua strain Uganda Contig12141.Uhm mRNA sequence.
EZ344925.1:298-312
CACCTCAGAGTTAGCCTGGGTAAAACGGAA298AATGTTGTCAATGAAGAGAAGCACATCTTGTCCTTCAGCATCTCT
TSA: Dermacentor variabilis contig00098.Dvb, mRNA sequence.
EZ525036.1:510-524
CACCTCAGAGCCAGCCTGGGTGAACCTGAA510AATGTTGTCAATGAAGAGCAGCACGTCCTGTCCTTCGTGGTCACG
TSA: Crepidula fornicata 13493.Cfedg, mRNA sequence.
EZ553596.1:148-162
TTGAATCTCAGAACAGAGAACAATGACACC148AATGTTGTCAATGAAACTGACAACCATATGTATTTTATAAACAGT
TSA: Striacosta albicosta stalb_01_00000738 mRNA sequence.
EZ580601.1:726-740
CACCTCAGAACCAGCCTGGGTGAAACGGAA726AATGTTGTCAATGAACAGCAGCACATCCTGTCCCTCCACATCACG
TSA: Sarcophaga crassipalpis HAHN.FLY.984.C2 mRNA sequence.
EZ598638.1:1399-1413
GTCACGAGTTCAGCAAATTCTTTCTCATGT1399AATGTTGTCAATGAAGGTTTAGCCTCACTGTTGGCTCCCCACATA
TSA: Cajanus cajan cultivar UPAS 120 contig06867.UPAS mRNA sequence.
EZ624584.1:944-958
ACTACTGGTTTTGTAGGTGCTGATCTGGCA944AATGTTGTCAATGAAGCTGCTTTGCTTGCTGCTCGTAGAGGTTGT
TSA: Cajanus cajan cultivar UPAS 120 contig15591.UPAS mRNA sequence.
EZ633308.1:2-16
A2AATGTTGTCAATGAACACCGTAGCACACAATTATATGTAAAATCT
TSA: Cajanus cajan cultivar Asha contig17845.Asha mRNA sequence.
EZ665709.1:975-989
ACTACTGGTTTTGTAGGTGCTGATCTGGCA975AATGTTGTCAATGAAGCTGCTTTGCTTGCTGCTCGTAGAGGTTGT
TSA: Anopheles funestus cmb2_c1926 mRNA sequence.
EZ917107.1:488-502
CACCTCCGAACCGGCCTGGGTGAAGCGGAA488AATGTTGTCAATGAACAGCAGCACATCCTGACCCTCCTGGTCACG
TSA: Elaeocarpus photiniifolius mRNA, contig: Ep_rep_c132.
FX134027.1:985-999
CACCTCTGAGTTAGCTTGAGTAAAGCGGAA985AATGTTGTCAATGAAAAGAAGCACATCTTGCCCTTCAGCATCACG
TSA: Pandanus boninensis mRNA, contig: Pb_rep_c385.
FX162135.1:810-824
CACTTCTGAGTTAGCTTGGGTGAACCGGAA810AATGTTGTCAATGAAAAGAAGCACATCTTGCCCTTCAGCATCTCT
TSA: Morus alba mRNA, contig: contig00385.
FX177384.1:630-644
CACCTCAGAGTTAGCCTGGGTGAATCTGAA630AATGTTGTCAATGAAGAGAAGCACATCTTGCCCTTCAGCATCACG
TSA: Morus alba mRNA, contig: isotig00864.
FX178448.1:630-644
CACCTCAGAGTTAGCCTGGGTGAATCTGAA630AATGTTGTCAATGAAGAGAAGCACATCTTGCCCTTCAGCATCACG
TSA: Lymnaea stagnalis mRNA, contig: LymstCNS_TSA_4075.
FX184193.1:2066-2080
CCCAACCACAGTTGCAATATATTTGGCAAT2066AATGTTGTCAATGAATCCCATCTGAACTCGAAAGTGGATGAAATT
TSA: Pyrus pyrifolia mRNA, contig: contig_11262revcomp.
FX426881.1:526-540
TTTTCATCTCATTTGAGATTCTACTTTTTA526AATGTTGTCAATGAATATATGAATATATCCATTCCTATTAATAGT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_15770.
FX679964.1:303-317
CACTTCAGAGTTAGCCTGAGTGAAACGGAA303AATGTTGTCAATGAAAAGCAACACATCCTGGCCTTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2497.
FX699378.1:285-299
CACTTCCGAGTTGGCCTGAGTGAAACGGAA285AATGTTGTCAATGAAAAGCAACACATCTTGGCCTTCGGCATCACG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_9585.
FX700993.1:72-86
CACTTCAGAGTTAGCCTGAGTGAAACGGAA72AATGTTGTCAATGAAAAGCAACACATCTTGGCCTTCAGCATCACG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7995.
FX714409.1:225-239
GACTTCAGAGTTGGCCTGAGTGAATCGGAA225AATGTTGTCAATGAAAAGCAACACATCTTGGCCCTCAGCATCACG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_10680.
FX714717.1:225-239
CACTTCTGAGTTGGCCTGAGTGAATCGGAA225AATGTTGTCAATGAAAAGCAACACATCTTGGCCCTCGGCATCACG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_27550.
FX721962.1:72-86
CACTTCAGAGTTAGCCTGAGTGAAACGGAA72AATGTTGTCAATGAAAAGCAACACATCTTGGCCTTCAGCATCACG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2970.
FX733134.1:285-299
CACTTCCGAGTTGGCCTGAGTGAAACGGAA285AATGTTGTCAATGAAAAGCAACACATCTTGGCCTTCGGCATCACG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_15041.
FX740837.1:72-86
CACTTCAGAGTTAGCCTGAGTGAAACGGAA72AATGTTGTCAATGAAAAGCAACACATCTTGTCCTTCGGCATCACG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8026.
FX751308.1:624-638
CACTTCAGAGTTAGCCTGAGTGAAACGGAA624AATGTTGTCAATGAAAAGCAACACATC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_16000.
FX770830.1:75-89
CACTTCAGAGTTAGCCTGAGTGAAACGGAA75AATGTTGTCAATGAAAAGCAACACATCCTGGCCTTCAGCGTCACG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_34778.
FX772623.1:57-71
CACTTCAGAGTTAGCCTGAGTGAAACGGAA57AATGTTGTCAATGAAAAGCAACACATCTTGGCCTTCAGCATCACG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_10033.
FX775600.1:303-317
CACTTCAGAGTTAGCCTGAGTGAAACGGAA303AATGTTGTCAATGAAAAGCAACACATC
TSA: Bdellocephala annandalei mRNA, contig: contig_15352.
FX819594.1:153-167
AAACAACAAAATGGATGCATTAAAACAAAA153AATGTTGTCAATGAAATTAGAAAAGTTAGCAGCAAATAAAAAATC
TSA: Bdellocephala annandalei mRNA, contig: contig_30844.
FX835086.1:199-213
GCAATCTGGTATTCATATTTTTAAGAACTA199AATGTTGTCAATGAATGGCAAAATATGTTGCAAATACTCAGAGTA
TSA: Lygodium japonicum RNA, contig: isotig30129_gene=isogroup16172.
FX975201.1:987-1001
GAAGAAAGAGAACTTTGAAGTGAATCAATG987AATGTTGTCAATGAAGGAAAGAATGTACAAGATGCTCAAAAGCAA
TSA: Sedum alfredii, clone Sa_Contig14394.
HE731499.1:396-410
CACTTCTGAGTTAGCCTGAGTGAAACGGAA396AATGTTGTCAATGAAGAGAAGCACATCTTGACCTTCT
TSA: Psychotria gabriellae, clone contig_25629.
HE846849.1:132-146
GACCGTGATGCCAGGATTTGTCTCTGGAGG132AATGTTGTCAATGAAGATGATTCCTTATTAATTCTTGTCATATTA
TSA: Exoneura robusta Contig35656.Exro mRNA sequence.
HP929101.1:1024-1038
AAATAAGGGACGGATGAGGGTTAACAAAGA1024AATGTTGTCAATGAAATTTCAAAAGCAATACCATCGAAGATTTGA
TSA: Meretrix meretrix Contig19285.Meme mRNA sequence.
JI276785.1:165-179
ATTCTATTAGAGGTTATTATTCTATTATTG165AATGTTGTCAATGAAGTTTGACCATTTCTCTCCGTGTTTTTGAAG
TSA: Onchocerca flexuosa mRNA sequence.
JI466243.1:505-519
CGTTGTGATGTTATTGCACAAGGTATGATC505AATGTTGTCAATGAACTTCAGCTCAAAATTCCTGTTGTTGTTCGC
TSA: Onchocerca flexuosa mRNA sequence.
JI474647.1:658-672
AAACTAATGAGAATAGTCAGTTAAACAGCA658AATGTTGTCAATGAATAAAATTATAC
TSA: Phalaenopsis aphrodite PATC149636 mRNA sequence.
JI646030.1:61-75
CACTTCAGAACCAGCTTGAGTGAATCGGAA61AATGTTGTCAATGAACAACAACACATCCTGGCCTTCCTCATCACG
TSA: Copidosoma floridanum isotig03827.Coflemb mRNA sequence.
JI834980.1:1062-1076
TACCTCAGAACCAGCTTGGGTAAACCTGAA1062AATGTTGTCAATGAAGAGCAGCACGTCCTGGCCTTCCTGATCGCG
TSA: Punica granatum pom_peel_seq_4488.contig1 mRNA sequence.
JI985609.1:127-141
TACCTCGGAACCGGCCTGGGTGAAACGGAA127AATGTTGTCAATGAAGAGCAGCACATCCTGTCCCTCTTGATCGCG
TSA: Bombus terrestris a49652.btermhead mRNA sequence.
JL664133.1:518-532
ACACACTCGTTAGATTATATCGTTTGATAA518AATGTTGTCAATGAAATTATTTTACTTCTTATGTTTTATCCGTTT
TSA: Bombus terrestris a28060.bterqhead mRNA sequence.
JL727693.1:3252-3266
ACACACTCGTTAGATTATATCGTTTGATAA3252AATGTTGTCAATGAAATTATTTTACTTCTTATGTTTTATCCGTTT
TSA: Bombus terrestris a137804.bterqova mRNA sequence.
JL832539.1:101-115
ACACACTCGTTAGATTATATCGTTTGATAA101AATGTTGTCAATGAAATTATTTTACTTCTTATGTTTTATCCGTTT
TSA: Oncidium Gower Ramsey contig11046.OnGoRa mRNA sequence.
JL899273.1:722-736
AATTCACTCCTTGGGCTTCCTCCGCATCTC722AATGTTGTCAATGAACGGCAATGATGAAAGAGGTCAGCTACACCT
TSA: Nannospalax galili isotig15943.Nagamubr mRNA sequence.
JO019686.1:251-265
GAACAGTGGAAACGAGCTATGGATTATTTA251AATGTTGTCAATGAACTCAACTACATGACCCAGATTGTTATCATG
TSA: Nannospalax galili isotig15944.Nagamubr mRNA sequence.
JO019687.1:251-265
GAACAGTGGAAACGAGCTATGGATTATTTA251AATGTTGTCAATGAACTCAACTACATGACCCAGATTGTTATCATG
TSA: Elaeis guineensis isotig04037.Elguifruit mRNA sequence.
JO091291.1:802-816
CACTTCAGAATTTGCTTGGGTGAAACGGAA802AATGTTGTCAATGAAAAGAAGCACATCTTGCCCTTCAGCATCTCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj134tsa/AATGTTGTCAATGAA
lang : en | db : ddbj134tsa | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.180 | 0.172 | search_plus_done; http://172.18.8.138:50415/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.218 | 0.037 | search_minus_done; http://172.18.8.138:50415/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=0
0.218 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).