GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-04-18 10:22:35, GGGenome : DDBJ release 92.0 (Feb, 2013)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Homo sapiens PAC clone RP5-982C16 from 7, complete sequence.
AC004547.1:33513-33527
AACTAACACCCATAAAAGGTATGACTCTTT33513GATTTAACATAATATTCTATAACAAATATA
Homo sapiens clone RP11-225G18 from 7p14-15, complete sequence.
AC007350.1:94097-94111
TCTACAGATTTTGGATTTACCAGCCCCCAC94097TTCCTTAAAATCTCTCTCTCTCTCTCTCTC
Homo sapiens, clone RP11-84A1, complete sequence.
AC007511.8:14923-14937
ACTCACTGGATCCAATCAGCATAATGTCAT14923AAGAGTTGAACTCTGTAAAATATTTGAAGA
Homo sapiens chromosome 19 clone CTC-490E21, complete sequence.
AC008537.5:115366-115380
CTCCCTTAGGAGAGCTGTTAACATTATACT115366AAAGCTAAGATAGGCCAGGCATGGTGGCTC
Homo sapiens BAC clone RP11-387H5 from 2, complete sequence.
AC020571.9:33887-33901
AATGCCCCACATTTCATTAAGGGTGATGAC33887GAAGTTGCTTCTCATATAACTATACTGTCA
Homo sapiens chromosome 11, clone RP11-72C9, complete sequence.
AC067902.6:101358-101372
CTTTTCTCTATTCACTGTCCTCAATGCTAG101358CAAGACATATCTATGTTCCAGGAAACTCAA
Homo sapiens chromosome 8, clone RP11-566H8, complete sequence.
AC068672.11:2480-2494
TTTGAAAAAAGAGACACAATAAAACTTAAT2480AAGTGGAAATATCGATGAATTTAAAAATAC
Homo sapiens 12 BAC RP3-361K10 (Roswell Park Cancer Institute Human BAC Library) complete sequence.
AC073616.17:74518-74532
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA74518TTTGATAAAGTTTAATATTCACATTAAAAG
Homo sapiens BAC clone RP11-348A21 from 7, complete sequence.
AC079231.6:83390-83404
TCTTCTCAGGCAATATTTGTTGAACGAACC83390GCTAATGAGCTGACTCAGGCCAGGCACCAC
Homo sapiens chromosome 3 clone RP11-321I9 map 3p, complete sequence.
AC087590.2:119880-119894
GGACTATTATATGACTATATTATAATCTTA119880TATATGTTTCCAATTTCTGGCTATTACAAT
Homo sapiens chromosome 3 clone RP11-241K3, complete sequence.
AC093928.2:30245-30259
GCCTGTTTTTCATATGCATATGTAATAGGG30245AACACAATAGTATTTGGAGTGCAGCATAGT
Homo sapiens 3 BAC RP11-529P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence.
AC117470.8:37788-37802
AATTTGAATATTAATTTTAAAATTTATTCA37788CATTGTCAGACATTTTGCAGCATTTCTTTA
Homo sapiens FOSMID clone ABC27-1763L3 from chromosome 19, complete sequence.
AC240664.3:26187-26201
CTCCCTTAGGAGAGCTGTTAACATTATACT26187AAAGCTAAGATAGGCCAGGCATGGTGGCTC
Homo sapiens CYP2GP2 gene, exon 2.
AF274756.1:309-323
CTCCCTTAGGAGAGCTGTTAACATTATACT309AAAGCTAAXGGGGAGGGAGGCAGAAGCCTG
Homo sapiens CYP2GP1 gene, exon 2.
AF274764.1:308-322
CTCCCTTAGGAGAGCTGTTAACATTATACT308AAAGCTAAXGGGGAGGGAGGCAGAAGCCTG
Pan troglodytes BAC clone RP43-41C9 from chromosome 7, complete sequence.
AC145986.2:137372-137386
TCTACAGATTTTGGATTTACCAGCCCCCAC137372TTCCTTAAAATCTCTCTCTCACTGTCTCTC
Pan troglodytes BAC clone RP43-156P2 from chromosome 7, complete sequence.
AC147061.3:141344-141358
AACTAACACCCATAAAAGGTATGACTCTTT141344GATTTAACATAATATTCTATAACAAATATA
Pan troglodytes BAC clone CH251-50E4 from chromosome 7, complete sequence.
AC189126.2:167589-167603
TCTTCTCAGGCAATATTTGTTAAACGAACC167589GCTACTGAGCTGACTCAGGCCAGGCACCAC
Pan troglodytes BAC clone CH251-649M9 from chromosome 19, complete sequence.
AC194534.4:153222-153236
CTCCCTTAGGAGAGCTGTTAACATTATACT153222AAAGCTAAGATAGGCCGGGTGTGGTGGCTT
Pongo abelii BAC clone CH276-41K3 from chromosome 8, complete sequence.
AC200433.3:108392-108406
AATCTAGCCTTGAAAGCCCCTTCCAGAGCC108392GCTTTCCCTGCTGAATGATAGCTCTCTGGG
Rhesus Macaque BAC CH250-475D9 () complete sequence.
AC202848.5:135471-135485
CTCCCTTAGGAGAGCTGTTAACATTATACT135471AAGCTAAGATAGGCCGGTGTGGTGGCTCAC
Macaca mulatta BAC CH250-327F20 () complete sequence.
AC202850.6:34848-34862
CTCCCTTAGGAGAGCCGTTAACATTATACT34848AAAGCTAAGATAGGCAGGGCGTGGTGGCTC
Macaca mulatta BAC CH250-447E21 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence.
AC203030.6:127521-127535
ACTCCCTTAGGAGAGCTGTAACATTATACT127521AAGCTAAGACAGGCCAGGGGTGGTGGCTCA
Mus musculus chromosome 10, clone RP23-179O14, complete sequence.
AC118198.7:210723-210737
TACAGAGATACAGGATGGTTACATATATGA210723GTCCATCATATAAACAAACAGAAAGAAATA
Rattus norvegicus BAC CH230-273M4 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence.
AC120565.6:21441-21455
AATACAGGTAAAGGGCTGAACAATGCAAAA21441TTACTTAAAACTAAATGTAAATGGGAGAGG
Mus musculus 6 BAC RP23-265B8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence.
AC153574.4:84477-84491
ATCATGGTATCCACACAGAAGGCCCAGTTA84477GTGATGACACAAACAGGGAGAATGTGTTCA
Mus musculus 10 BAC RP23-116E8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence.
AC153829.7:152005-152019
TACAGAGATACAGGATGGTTACATATATGA152005GTCCATCATATAAACAAACAGAAAGAAATA
Mus musculus BAC clone RP23-399K3 from chromosome 14, complete sequence.
AC154574.2:107188-107202
TGGCTGCTGAGGTTGTCACTCTCAGTGGGC107188CACACCCTCCAGGGAGAGATTCCAGCAGCA
Mus musculus 6 BAC RP24-532I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence.
AC155835.3:114834-114848
TAACCAGCAGATGTTTATGGAAGAGTGAAC114834TGGATATATTTAGGAAACTGATAGTACTTT
Spermophilus tridecemlineatus clone VMRC20-719B8, complete sequence.
AC184040.3:67141-67155
CTTTTTTGTTTTATCTGCCATTTAAGTAAA67141TAAACAGTTACATTCTTTATAGGTTAAAGA
Mouse DNA sequence from clone RP23-211J18 on chromosome 2.
AL844531.6:20586-20600
ATATCTATTTATTCATTGATGTAGCTTTCA20586CACTGTTACTTCGTTGAGCACATGAAAAGT
Muntiacus reevesi clone CH245-317L13, complete sequence.
AC164916.3:47673-47687
TTTGTTGTGATCCACACAGTGAAAGGTTTC47673GCAGATTTTTTTTTCTGGAATTACTTTGGT
Sus scrofa BAC clone KNP_283F4.
FN673729.1:131036-131050
ATTGTGAGAGCCCAGCAGAACAGAATCTGG131036ACAGACCTACGTAGTAGTGCTTTACCTAAT
Sus scrofa BAC clone KNP_1056G6.
FN673775.1:15472-15486
ATTGTGAGAGCCCAGCAGAACAGAATCTGG15472ACAGACCTACGTAGTAGTGCTTTACCTAAT
Gallus gallus BAC clone CH261-127B8 from chromosome z, complete sequence.
AC189016.1:93625-93639
GAACAATGGAAACGAGCTATGGATTACTTA93625CTCAATTACATGACACAGATTGTTATCATG
Callorhinchus milii BAC clone IMCB_Eshark-16H12 from chromosome unknown, complete sequence.
AC238864.1:63987-64001
TCGGAAGAGCTCCTCGGCTCACTTTTAATG63987AAGAATTTTGTTATCGATCGGAACCAAGAG
Zebrafish DNA sequence from clone DKEY-29G23.
AL953844.7:170025-170039
AAGCCATCTGAAATTAAATGTTTCAATTTA170025TCAGATTTAGTTTCAAGTGTACATACGGCA
Zebrafish DNA sequence from clone CH211-208O6 in linkage group 24.
BX248581.17:9458-9472
TATTCTACAGTTGTGTTTCCAATTAACTCA9458CCAATCAGAAACTTTCAAAACCTTGACATT
Zebrafish DNA sequence from clone DKEYP-114G10 in linkage group 7.
BX324119.5:56566-56580
TGATTTTACCAGTGAATAAAATGGTCTAAT56566AGATTGCAAGCATATATCTCAAACATAATT
Zebrafish DNA sequence from clone DKEY-193B15 in linkage group 2.
BX470229.4:31240-31254
AAAGCAAACTGAAATTAAATGTTTCAATTG31240TCTTAAAATGTACAGTAAATATGTCACTCG
Zebrafish DNA sequence from clone RP71-80D18 in linkage group 4.
BX511190.8:59789-59803
GCAGAGCTTCAAAAAAGCATGTTTCAATTA59789TCAGATTTTTTAAAATGTAAATAATATCAA
Zebrafish DNA sequence from clone DKEY-177G18 in linkage group 23.
BX548247.6:28097-28111
CATTTTATCAGTAAAAACAAAAGGTCTAAT28097AAATGACAAGCATATATCACAAACATAATA
Zebrafish DNA sequence from clone DKEY-174I19 in linkage group 18 Contains the gene for a novel protein similar to vertebrate dihydrofolate reductase (DHFR), the cry1b gene for cryptochrome 1b, the ge
BX571976.11:166163-166177
TCTTTTTTGTGTGTACTACTACAAGTGATG166163GAGCATTGCCATTTAGATCACTTTTTTGCA
Zebrafish DNA sequence from clone DKEY-12N3 in linkage group 4.
BX649331.16:81798-81812
GTTTCAAAAAGAAATGAGCCAAGGTCATAC81798GCAGGACAACAGTTTCGCCGCAACAGACGC
Zebrafish DNA sequence from clone CH211-170D11 in linkage group 18.
BX649610.5:61969-61983
ACTTTTTTGTGTGTACTACTACAAGTGATG61969GAGCATTGCCATTTAGATCACTTTTTTGCA
Zebrafish DNA sequence from clone CH211-12A23 in linkage group 8.
CR354558.20:138195-138209
TGATTTTACCAGCAGAAAAAATGGTCTAAT138195AAACAACATGCATATGTCTGAAACATAATA
Zebrafish DNA sequence from clone CH211-218K8.
CR361561.8:128972-128986
GTTTCAAAAAGAAATGAGCCAAGGTCATAC128972GCAGGACAACAGTTTCGCCGCAACAGACGC
Zebrafish DNA sequence from clone DKEY-76F6 in linkage group 12.
CR752646.10:19486-19500
ACAACAATTTCAACTGAGATGTTTAAATTA19486TCTTTTTTGTATTGTACAAAAAAAAAAAAA
Zebrafish DNA sequence from clone DKEY-182D5 in linkage group 7.
CR786573.12:134919-134933
AATTTTGTCAATAAATAAAACTTGACTGAA134919TCAGAAACTATTAAAAAGTACCAAACAAAT
Zebrafish DNA sequence from clone DKEYP-99G4 in linkage group 8.
CR847868.9:33963-33977
TGATTTTACCAGCAGAAAAAATGGTCTAAT33963AAACAACATGCATATGTCTGAAACATAATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/ddbj92/AATGTTGTCAATGAA
lang : ja | db : ddbj92 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.614 | 2.605 | search_plus_done; http://172.18.8.76:42313/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
5.122 | 2.508 | search_minus_done; http://172.18.8.76:42313/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=0
5.122 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).