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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2021-04-23 18:06:32, GGGenome : Kangaroo rat genome, Broad/dipOrd1 (Jul, 2008)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

scaffold_1652:50675-50689
TTATTCCACTTTACATGCTAATCTTACTTT50675TTCATTGACAACATTTTACTCCAAAAATAGTAAATTTAGAAATCA
scaffold_2840:88341-88355
AGCTGCCAGACACTATACAGGGTAAAATTT88341TTCATTGACAACATTTCAAAGATCATTGTGCAATGCTTTAGTCCT
scaffold_5423:43703-43717
ATTTGTAGTTCTTCCTTGTAGCTAACATAA43703TTCATTGACAACATTTGTATATGTCTTCATACTACCCACTCGCAG
scaffold_5875:49141-49155
ATCATCAGGGTGAAGTTGGCCAGTTGTGGC49141TTCATTGACAACATTGTTCTAGCCAGGAAGTTTTTCACACTCTAC
scaffold_20072:25226-25240
TTTAGGAAGGGTGGATTTTACTGTTGCATT25226TTCATTGACAACATTCTAACCACCCCCATCTTATTAGTTGTGATT
scaffold_20072:27541-27555
TTTAGGAAGGGTGGATTTTACTGTTGCATT27541TTCATTGACAACATTCTAACCACCCCCATCTTATTAGTTGTGATT
scaffold_122256:5280-5294
TTCCTCATGCATTAAAATATATCTTTGGAT5280TTCATTGACAACATTTTGAGGCAGTTATGATCATTTTGGCTCTTC
scaffold_85:205308-205322
TGCCTGCAAACCTCATCCACTTTTATCCAA205308AATGTTGTCAATGAACATACACTTGTTTATGACATCATTTTTCTA
scaffold_3808:11907-11921
TTGAATATACATTCTAACCTCATCTTAACA11907AATGTTGTCAATGAAAAACCTGAATAACAGTAGTACTGGTTGCTG
scaffold_9004:38267-38281
CATAACAATGGCAACTAAGTTGTGTGCATG38267AATGTTGTCAATGAAATGAAGAAGAATCAACAACATGCATAGTAT
scaffold_20113:2752-2766
AACTCAAGTCTCATCTCCAGCTTCACATCA2752AATGTTGTCAATGAATTTTTTTATTAGAAATTTTCATTATAAACT
scaffold_43907:1060-1074
GCCTGCTTTTCATATGCATATGTAATAGTG1060AATGTTGTCAATGAAAACACAATAATATTTGGAGTGCAGTATGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/dipOrd1/TTCATTGACAACATT
lang : ja | db : dipOrd1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.007 | 0.007 | search_start;
0.080 | 0.073 | search_plus_done; http://172.18.8.78:28039/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.005 | search_minus_done; http://172.18.8.78:28039/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.087 | 0.001 | cgi_end;

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