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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-04-21 01:37:02, GGGenome : Hedgehog genome, EriEur2.0/eriEur2 (May, 2012)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

JH835341:1906322-1906336
CCTGTCACAGATTCTATATTCTGCTCATTG1906322TTCATTGACAACATTTTGGCAACCAGGGTGAGGGAAGGTTTGTCT
JH835401:2258974-2258988
TCCCTAAGAAATTTCTGGAAGGGCTCACCG2258974TTCATTGACAACATTTGCCCAGGAAAGGGGGCCAAGGCTGGGTGT
JH835518:1896128-1896142
ATCATACGGGTGAAGCTGGCCAGCTGCGGA1896128TTCATTGACAACATTGTTCTGGCCCGGAAGTTCTTCACGCTCTAC
JH835740:985842-985856
TCTGGATTGCTAAAGATACCTCCCTCTATA985842TTCATTGACAACATTAATAATATCTCATGAACATCTTCTATTTAA
JH835760:705738-705752
AACTCCCCCACTGATACTTTTTAATATATA705738TTCATTGACAACATTTTCAAAAGATTTACTTGATAGAGACTGAAA
JH836029:101438-101452
CTCTCTGTACCTTTCTCTGTATATCTACCT101438TTCATTGACAACATTGGAAACAGAGTTGGCAGTCAGCTGAGGTAA
JH835304:3674957-3674971
TTAATATTAATATTAAATGGATGCCCACAG3674957AATGTTGTCAATGAAAATCTGTGTTTTAAGCGATAATATATTCTA
JH835342:4986515-4986529
CTTCCTAGCACGCAGAACTGAGGAAAATCA4986515AATGTTGTCAATGAATGGAATAATAAGAAGAGTGTTTTGAAACAA
JH835423:2566087-2566101
AATTGATCAGATCACTCAGCAACAACAAGA2566087AATGTTGTCAATGAAAGTCTAGAAAAATAATGTTAACAATTTCCA
JH835434:575422-575436
AGAGTTAGGTCCTTGAATAAGATTTCATAT575422AATGTTGTCAATGAAAAAAAAAAAAGGAATCTTAGCCATGCTGAA
JH835604:763060-763074
GAACAGTGGAAACGTGCTATGGATTATTTA763060AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
JH835682:102696-102710
ACACATACGTACATACATATTTGCTCAGTG102696AATGTTGTCAATGAATGAGCATCTTCATTTTGTGTAAGAAGATTC
JH835689:527283-527297
TACAGGTCATGTGCTATTGCTCAGAGACTT527283AATGTTGTCAATGAAGAGGCATTTAGCTCAGATGAAAACCTGTTG
JH835812:602063-602077
TTTTAGCTTGATATATATAAATATAATGTT602063AATGTTGTCAATGAAAAATTAATTGTACAAAGAAGTGTAAGTTTA
JH836152:432656-432670
TATTTAATTGATATTTACAATTCTGCTCTT432656AATGTTGTCAATGAAGAGTAAATGCATTAAAATCTCTTTTATTGC
JH836480:286022-286036
TGTCACTTTCTCTTTATGAGACAAAGTATC286022AATGTTGTCAATGAAGTAAATGCAATTTTCCTCACTTCCAATCAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/eriEur2/TTCATTGACAACATT
lang : ja | db : eriEur2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.78:28037/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.006 | search_minus_done; http://172.18.8.78:28037/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.092 | 0.003 | cgi_end;

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