GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-25 09:46:01, GGGenome : Cat genome, ICGSC Felis_catus 6.2/felCat5 (Sep, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chrA1:163995417-163995431
GAACAGTGGAAACGGGCTATGGATTACTTA163995417AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
chrA2:24888711-24888725
GCCTGTTTTTCATATGCATATGTAATAGTG24888711AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATACC
chrA2:106496423-106496437
TTGTTTTCTTGTTTCATTCCCTTAATTATT106496423AATGTTGTCAATGAAGCAGGAATTACCCAAAATGATGAGGAAAGG
chrA2:125050315-125050329
AGAGGGGTAAAAGTGATACCTCCTAAGACT125050315AATGTTGTCAATGAAGTAAATCCACGCCTATGAGAAGTTTACCTG
chrB1:79303177-79303191
TTAATATTAATATTAAATGGATGCCCACAG79303177AATGTTGTCAATGAAAATCTGTGTTTAAAGTGATAATATATTCTA
chrB2:24568518-24568532
CCTTGGTCAGTGTCCCCTCTTGCTTTTTAT24568518AATGTTGTCAATGAAGATTATTGGTATCTAAACACCACCCCACTC
chrB3:82608878-82608892
TGATCATGAAAAATTGTATTTTTCTCACAA82608878AATGTTGTCAATGAAAAGAGCACTAAAAATAGTAGATAAAGTCTG
chrC1:81380775-81380789
AGATAGAAAGAGAGAGAGAGAATGCAAATA81380775AATGTTGTCAATGAAATCACAGGCTACCAAAGGGGGGGGGAAAGG
chrC1:180764678-180764692
AGTTCTTAAGTGGCAGTAACGCCATGATAA180764678AATGTTGTCAATGAACATTTCTTCATCACTCTTGATATTCTATGT
chrD1:89672004-89672018
TGACAATGTGTCACTTTAGAGATTATCATT89672004AATGTTGTCAATGAAAAGCCATTTCTCATCATCCTTATGCCAGTT
chrD2:736746-736760
CAGGGCTTGCAACTGTCATGCTCTGAAAAC736746AATGTTGTCAATGAATCAATCTCATGGCTTCTCTTTTTAGCTGTA
chrF1:57931865-57931879
GGAATGTGTATGACAGAGAGAGAATTTCAA57931865AATGTTGTCAATGAAGGGCGCCTGGGTGGCTGAGTCGGCTAAGCA
chrB2:69554644-69554658
GTTGGGGCCAGAGTTCCATCCAGAATTAAG69554644TTCATTGACAACATTCCCCTCACCACTCACTCTTTCCCAGACTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/felCat5/AATGTTGTCAATGAA
lang : en | db : felCat5 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.78:28025/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.006 | search_minus_done; http://172.18.8.78:28025/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=38
0.090 | 0.000 | cgi_end;

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