GGGenome | Results

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2025-04-09 04:01:14, GGGenome : Cat genome, ICGSC Felis_catus_8.0/felCat8 (Nov, 2014)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chrB2:67522330-67522344

GTTGGGGCCAGAGTTCCATCCAGAATTAAG67522330TTCATTGACAACATTCCCCTCACCACTCACTCTTTCCCAGACTTT

chrA1:164231825-164231839

GAACAGTGGAAACGGGCTATGGATTACTTA164231825AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG

chrA2:25401672-25401686

GCCTGTTTTTCATATGCATATGTAATAGTG25401672AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATACC

chrA2:105213265-105213279

TTGTTTTCTTGTTTCATTCCCTTAATTATT105213265AATGTTGTCAATGAAGCAGGAATTACCCAAAATGATGAGGAAAGG

chrA2:123910848-123910862

AGAGGGGTAAAAGTGATACCTCCTAAGACT123910848AATGTTGTCAATGAAGTAAATCCACGCCTATGAGAAGTTTACCTG

chrB1:78883422-78883436

TTAATATTAATATTAAATGGATGCCCACAG78883422AATGTTGTCAATGAAAATCTGTGTTTAAAGTGATAATATATTCTA

chrB2:26276581-26276595

CCTTGGTCAGTGTCCCCTCTTGCTTTTTAT26276581AATGTTGTCAATGAAGATTATTGGTATCTAAACACCACCCCACTC

chrB3:81218072-81218086

TGATCATGAAAAATTGTATTTTTCTCACAA81218072AATGTTGTCAATGAAAAGAGCACTAAAAATAGTAGATAAAGTCTG

chrC1:82651133-82651147

AGATAGAAAGAGAGAGAGAGAATGCAAATA82651133AATGTTGTCAATGAAATCACAGGCTACCAAAGGGGGGGGGAAAGG

chrC1:181252522-181252536

AGTTCTTAAGTGGCAGTAACGCCATGATAA181252522AATGTTGTCAATGAACATTTCTTCATCACTCTTGATATTCTATGT

chrD1:87858373-87858387

TGACAATGTGTCACTTTAGAGATTATCATT87858373AATGTTGTCAATGAAAAGCCATTTCTCATCATCCTTATGCCAGTT

chrD2:767157-767171

CAGGGCTTGCAACTGTCATGCTCTGAAAAC767157AATGTTGTCAATGAATCAATCTCATGGCTTCTCTTTTTAGCTGTA

chrF1:59267211-59267225

GGAATGTGTATGACAGAGAGAGAATTTCAA59267211AATGTTGTCAATGAAGGGCGCCTGGGTGGCTGAGTCGGCTAAGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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BED format: Link | Download
GFF format: Link | Download
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Debug Info:

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.78:28754/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.78:28754/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=49
0.090 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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