GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-25 06:16:36, GGGenome : Chicken genome, Gallus_gallus-5.0/galGal5 (Dec, 2015)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr3:93447939-93447953
TAGCAGACTTGTAACCTTTATGAATCTGTA93447939AATGTTGTCAATGAAATGGCTTCTAAAGATGATTAAACACCATAT
chr4:11295649-11295663
TTCAGGGTACAGCCACAGTCCCTGATGTTA11295649AATGTTGTCAATGAAATGTCATGAGTGCTGTTCTGCAATAAGGCT
chr2:3581379-3581393
ACTTCACACTCTACTTGCACAGAGTTAAAA3581379TTCATTGACAACATTGCTCTAAATCATCAGACAAGGATGTAATGG
chr14:14568282-14568296
AAGAGGGGGTGGTGAGAGAGGAAGCTGTGC14568282TTCATTGACAACATTCCTTGATGTTGTTGCCACTGGTAGAGTGGA
chr21:738706-738720
TGCAGCAAATATTTTAAAGAAAACATGAAA738706TTCATTGACAACATTAATCAACAAATATTATTCAACTTATATTGG
chrZ:49987798-49987812
CATGATAACAATCTGTGTCATGTAATTGAG49987798TTCATTGACAACATTTAAGTAATCCATAGCTCGTTTCCATTGTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/galGal5/AATGTTGTCAATGAA
lang : en | db : galGal5 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.76:28755/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.004 | search_minus_done; http://172.18.8.76:28755/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=48
0.088 | 0.001 | cgi_end;

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