GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 03:19:55, GGGenome : Chicken genome, Gallus_gallus-5.0/galGal5 (Dec, 2015)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2:3581379-3581393
ACTTCACACTCTACTTGCACAGAGTTAAAA3581379TTCATTGACAACATTGCTCTAAATCATCAGACAAGGATGTAATGG
chr14:14568282-14568296
AAGAGGGGGTGGTGAGAGAGGAAGCTGTGC14568282TTCATTGACAACATTCCTTGATGTTGTTGCCACTGGTAGAGTGGA
chr21:738706-738720
TGCAGCAAATATTTTAAAGAAAACATGAAA738706TTCATTGACAACATTAATCAACAAATATTATTCAACTTATATTGG
chrZ:49987798-49987812
CATGATAACAATCTGTGTCATGTAATTGAG49987798TTCATTGACAACATTTAAGTAATCCATAGCTCGTTTCCATTGTTC
chr3:93447939-93447953
TAGCAGACTTGTAACCTTTATGAATCTGTA93447939AATGTTGTCAATGAAATGGCTTCTAAAGATGATTAAACACCATAT
chr4:11295649-11295663
TTCAGGGTACAGCCACAGTCCCTGATGTTA11295649AATGTTGTCAATGAAATGTCATGAGTGCTGTTCTGCAATAAGGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/galGal5/TTCATTGACAACATT
lang : en | db : galGal5 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.079 | 0.070 | search_plus_done; http://172.18.8.76:28755/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.082 | 0.004 | search_minus_done; http://172.18.8.76:28755/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.083 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).